Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SSX4O60224 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SSX4O60224 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC17.6■□□□□ 0.41
SSX4O60224 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SSX4O60224 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SSX4O60224 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SSX4O60224 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SSX4O60224 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SSX4O60224 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
SSX4O60224 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SSX4O60224 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SSX4O60224 AP000997.3-201ENST00000623333 2250 ntBASIC17.59■□□□□ 0.41
SSX4O60224 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SSX4O60224 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SSX4O60224 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC17.59■□□□□ 0.41
SSX4O60224 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
SSX4O60224 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
SSX4O60224 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SSX4O60224 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC17.59■□□□□ 0.41
SSX4O60224 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SSX4O60224 AL138781.2-201ENST00000617896 1843 ntBASIC17.59■□□□□ 0.41
SSX4O60224 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC17.59■□□□□ 0.41
SSX4O60224 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SSX4O60224 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC17.59■□□□□ 0.41
SSX4O60224 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
SSX4O60224 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
SSX4O60224 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC17.59■□□□□ 0.41
SSX4O60224 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SSX4O60224 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC17.59■□□□□ 0.41
SSX4O60224 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SSX4O60224 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SSX4O60224 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC17.59■□□□□ 0.41
SSX4O60224 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
SSX4O60224 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC17.59■□□□□ 0.41
SSX4O60224 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC17.59■□□□□ 0.41
SSX4O60224 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC17.59■□□□□ 0.41
SSX4O60224 RPS2P52-201ENST00000469610 820 ntBASIC17.59■□□□□ 0.41
SSX4O60224 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SSX4O60224 ADM-205ENST00000528544 586 ntTSL 2 BASIC17.59■□□□□ 0.41
SSX4O60224 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
SSX4O60224 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC17.59■□□□□ 0.41
SSX4O60224 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
SSX4O60224 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SSX4O60224 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SSX4O60224 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SSX4O60224 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SSX4O60224 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
SSX4O60224 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
SSX4O60224 AC120498.9-201ENST00000339021 3867 ntBASIC17.58■□□□□ 0.41
SSX4O60224 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
SSX4O60224 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.41
SSX4O60224 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC17.58■□□□□ 0.41
SSX4O60224 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC17.58■□□□□ 0.41
SSX4O60224 STX5-203ENST00000394690 1568 ntTSL 5 BASIC17.58■□□□□ 0.41
SSX4O60224 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC17.58■□□□□ 0.41
SSX4O60224 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
SSX4O60224 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
SSX4O60224 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
SSX4O60224 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SSX4O60224 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
SSX4O60224 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
SSX4O60224 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SSX4O60224 AL355472.2-201ENST00000422958 438 ntBASIC17.58■□□□□ 0.4
SSX4O60224 CDV3P1-201ENST00000471403 739 ntBASIC17.58■□□□□ 0.4
SSX4O60224 CASP6-205ENST00000505486 538 ntTSL 4 BASIC17.58■□□□□ 0.4
SSX4O60224 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC17.58■□□□□ 0.4
SSX4O60224 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC17.58■□□□□ 0.4
SSX4O60224 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC17.58■□□□□ 0.4
SSX4O60224 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC17.58■□□□□ 0.4
SSX4O60224 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
SSX4O60224 Z82202.1-201ENST00000623446 1880 ntBASIC17.58■□□□□ 0.4
SSX4O60224 AC106820.2-201ENST00000563775 3264 ntBASIC17.58■□□□□ 0.4
SSX4O60224 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC17.58■□□□□ 0.4
SSX4O60224 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SSX4O60224 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SSX4O60224 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC17.58■□□□□ 0.4
SSX4O60224 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
SSX4O60224 AL032819.2-201ENST00000624543 2162 ntBASIC17.57■□□□□ 0.4
SSX4O60224 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
SSX4O60224 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
SSX4O60224 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SSX4O60224 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
SSX4O60224 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC17.57■□□□□ 0.4
SSX4O60224 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SSX4O60224 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SSX4O60224 AL158047.1-201ENST00000445918 881 ntBASIC17.57■□□□□ 0.4
SSX4O60224 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC17.57■□□□□ 0.4
SSX4O60224 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC17.57■□□□□ 0.4
SSX4O60224 MMAB-206ENST00000540016 945 ntTSL 3 BASIC17.57■□□□□ 0.4
SSX4O60224 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC17.57■□□□□ 0.4
SSX4O60224 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC17.57■□□□□ 0.4
SSX4O60224 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC17.57■□□□□ 0.4
SSX4O60224 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC17.57■□□□□ 0.4
SSX4O60224 AP006294.2-201ENST00000641667 209 ntBASIC17.57■□□□□ 0.4
SSX4O60224 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
SSX4O60224 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
SSX4O60224 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SSX4O60224 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC17.57■□□□□ 0.4
SSX4O60224 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SSX4O60224 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms