Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AC140134.1-201ENST00000511830 3544 ntBASIC4.46□□□□□ -1.7
COL6A3P12111 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC4.46□□□□□ -1.7
COL6A3P12111 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC4.46□□□□□ -1.7
COL6A3P12111 TANC2-201ENST00000389520 6404 ntTSL 5 BASIC4.46□□□□□ -1.7
COL6A3P12111 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC4.46□□□□□ -1.7
COL6A3P12111 LINC02060-201ENST00000506041 1626 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
COL6A3P12111 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
COL6A3P12111 CTNND1-234ENST00000532844 6012 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
COL6A3P12111 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL6A3P12111 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC4.45□□□□□ -1.7
COL6A3P12111 AL008723.2-201ENST00000426354 562 ntTSL 4 BASIC4.45□□□□□ -1.7
COL6A3P12111 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
COL6A3P12111 AC025437.3-201ENST00000523178 771 ntTSL 5 BASIC4.45□□□□□ -1.7
COL6A3P12111 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC4.45□□□□□ -1.7
COL6A3P12111 AL683813.2-201ENST00000605245 502 ntBASIC4.45□□□□□ -1.7
COL6A3P12111 AC000095.2-202ENST00000637415 154 ntBASIC4.45□□□□□ -1.7
COL6A3P12111 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC4.45□□□□□ -1.7
COL6A3P12111 ATP2B4-204ENST00000367218 8918 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
COL6A3P12111 BDNF-212ENST00000525528 4766 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
COL6A3P12111 MAP4K4-219ENST00000625522 7458 ntAPPRIS P5 TSL 5 BASIC4.45□□□□□ -1.7
COL6A3P12111 AC092681.1-201ENST00000297369 291 ntBASIC4.45□□□□□ -1.7
COL6A3P12111 RNU4-6P-201ENST00000410804 122 ntBASIC4.45□□□□□ -1.7
COL6A3P12111 HSPE1P12-201ENST00000412576 301 ntBASIC4.45□□□□□ -1.7
COL6A3P12111 AC127537.2-201ENST00000439258 465 ntBASIC4.45□□□□□ -1.7
COL6A3P12111 LINC01431-201ENST00000442440 514 ntTSL 3 BASIC4.45□□□□□ -1.7
COL6A3P12111 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC4.45□□□□□ -1.7
COL6A3P12111 AC079896.1-201ENST00000455845 488 ntTSL 3 BASIC4.45□□□□□ -1.7
COL6A3P12111 UBE2CP3-201ENST00000502715 450 ntBASIC4.45□□□□□ -1.7
COL6A3P12111 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC4.45□□□□□ -1.7
COL6A3P12111 AC034105.3-201ENST00000565294 442 ntBASIC4.45□□□□□ -1.7
COL6A3P12111 AC090312.1-201ENST00000580637 348 ntBASIC4.45□□□□□ -1.7
COL6A3P12111 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC4.45□□□□□ -1.7
COL6A3P12111 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC4.45□□□□□ -1.7
COL6A3P12111 ZEB2-232ENST00000636026 5172 ntTSL 5 BASIC4.45□□□□□ -1.7
COL6A3P12111 COL6A5-201ENST00000265379 9214 ntAPPRIS P1 TSL 5 BASIC4.45□□□□□ -1.7
COL6A3P12111 ZHX3-201ENST00000309060 10030 ntAPPRIS P1 TSL 5 BASIC4.45□□□□□ -1.7
COL6A3P12111 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
COL6A3P12111 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL6A3P12111 RIMKLB-207ENST00000538135 5392 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL6A3P12111 OR14J1-203ENST00000641895 6443 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
COL6A3P12111 DLC1-201ENST00000276297 7447 ntAPPRIS P4 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL6A3P12111 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
COL6A3P12111 DOCK4-AS1-201ENST00000452714 2494 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
COL6A3P12111 MYOF-202ENST00000359263 6719 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
COL6A3P12111 SNTN-201ENST00000343837 1090 ntAPPRIS P1 TSL 2 BASIC4.45□□□□□ -1.7
COL6A3P12111 AP000580.1-201ENST00000404439 358 ntBASIC4.45□□□□□ -1.7
COL6A3P12111 AC016772.1-201ENST00000444170 1261 ntBASIC4.45□□□□□ -1.7
COL6A3P12111 OR9M1P-201ENST00000459641 921 ntBASIC4.45□□□□□ -1.7
COL6A3P12111 LINC01017-201ENST00000508823 768 ntTSL 3 BASIC4.45□□□□□ -1.7
COL6A3P12111 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC4.45□□□□□ -1.7
COL6A3P12111 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC4.45□□□□□ -1.7
COL6A3P12111 AC022884.2-201ENST00000578535 580 ntBASIC4.45□□□□□ -1.7
COL6A3P12111 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC4.45□□□□□ -1.7
COL6A3P12111 LINC01900-202ENST00000584898 603 ntTSL 5 BASIC4.45□□□□□ -1.7
COL6A3P12111 AL049634.3-201ENST00000604968 457 ntBASIC4.45□□□□□ -1.7
COL6A3P12111 AL592436.1-201ENST00000605135 558 ntBASIC4.45□□□□□ -1.7
COL6A3P12111 AC105402.3-203ENST00000608822 885 ntTSL 5 BASIC4.45□□□□□ -1.7
COL6A3P12111 KIF6-202ENST00000287152 9082 ntAPPRIS P1 TSL 2 BASIC4.45□□□□□ -1.7
COL6A3P12111 NBPF12-203ENST00000611443 5594 ntTSL 5 BASIC4.44□□□□□ -1.7
COL6A3P12111 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC4.44□□□□□ -1.7
COL6A3P12111 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
COL6A3P12111 PTCD3-201ENST00000254630 6734 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
COL6A3P12111 OR56A5-201ENST00000340110 738 ntBASIC4.44□□□□□ -1.7
COL6A3P12111 RNU1-59P-201ENST00000364829 162 ntBASIC4.44□□□□□ -1.7
COL6A3P12111 TRPM3-206ENST00000377097 554 ntTSL 2 BASIC4.44□□□□□ -1.7
COL6A3P12111 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC4.44□□□□□ -1.7
COL6A3P12111 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC4.44□□□□□ -1.7
COL6A3P12111 AC005972.3-201ENST00000606304 481 ntBASIC4.44□□□□□ -1.7
COL6A3P12111 U1.25-201ENST00000614085 162 ntBASIC4.44□□□□□ -1.7
COL6A3P12111 U1.34-201ENST00000618578 162 ntBASIC4.44□□□□□ -1.7
COL6A3P12111 U1.31-201ENST00000620022 160 ntBASIC4.44□□□□□ -1.7
COL6A3P12111 LINC02388-201ENST00000550678 1975 ntTSL 2 BASIC4.44□□□□□ -1.7
COL6A3P12111 NFAT5-208ENST00000566899 4914 ntAPPRIS ALT1 TSL 1 (best) BASIC4.44□□□□□ -1.7
COL6A3P12111 TCF4-278ENST00000636400 8343 ntTSL 5 BASIC4.44□□□□□ -1.7
COL6A3P12111 AL590806.1-201ENST00000415818 853 ntBASIC4.44□□□□□ -1.7
COL6A3P12111 AC092651.1-201ENST00000426110 312 ntBASIC4.44□□□□□ -1.7
COL6A3P12111 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC4.44□□□□□ -1.7
COL6A3P12111 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC4.44□□□□□ -1.7
COL6A3P12111 PSAT1P4-201ENST00000466500 526 ntBASIC4.44□□□□□ -1.7
COL6A3P12111 AP000563.1-201ENST00000490865 758 ntBASIC4.44□□□□□ -1.7
COL6A3P12111 ENSA-211ENST00000503345 793 ntTSL 3 BASIC4.44□□□□□ -1.7
COL6A3P12111 AC098799.3-201ENST00000506095 438 ntBASIC4.44□□□□□ -1.7
COL6A3P12111 AC097478.1-206ENST00000513572 2010 ntTSL 3 BASIC4.44□□□□□ -1.7
COL6A3P12111 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC4.44□□□□□ -1.7
COL6A3P12111 OR2M4-202ENST00000641868 5934 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
COL6A3P12111 LRRK2-201ENST00000298910 9158 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
COL6A3P12111 RPL14-201ENST00000338970 7072 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
COL6A3P12111 MGAT5-201ENST00000281923 8144 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
COL6A3P12111 WDR87-202ENST00000447313 9009 ntAPPRIS ALT2 TSL 2 BASIC4.44□□□□□ -1.7
COL6A3P12111 OR10A2-202ENST00000641461 5390 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
COL6A3P12111 CTNND1-233ENST00000532787 5751 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
COL6A3P12111 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
COL6A3P12111 PPBP-201ENST00000296028 715 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
COL6A3P12111 UBBP2-201ENST00000376781 231 ntBASIC4.43□□□□□ -1.7
COL6A3P12111 RPL7AP49-201ENST00000429522 581 ntBASIC4.43□□□□□ -1.7
COL6A3P12111 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC4.43□□□□□ -1.7
COL6A3P12111 AL591438.1-201ENST00000433508 581 ntBASIC4.43□□□□□ -1.7
COL6A3P12111 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC4.43□□□□□ -1.7
COL6A3P12111 RN7SL809P-201ENST00000482040 297 ntBASIC4.43□□□□□ -1.7
COL6A3P12111 PYM1-205ENST00000547925 499 ntTSL 3 BASIC4.43□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 88.5 ms