Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 SUPT7L-202ENST00000404798 4114 ntTSL 2 BASIC6.65□□□□□ -1.34
MSX1P28360 IL20-202ENST00000367098 1553 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
MSX1P28360 MFSD4BP1-201ENST00000513330 1552 ntBASIC6.65□□□□□ -1.34
MSX1P28360 WDR48-201ENST00000302313 3707 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
MSX1P28360 LRAT-206ENST00000507827 2654 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
MSX1P28360 DZIP3-201ENST00000361582 5350 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
MSX1P28360 BICRAL-202ENST00000394168 6515 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
MSX1P28360 ARHGEF3-214ENST00000497267 2197 ntTSL 2 BASIC6.65□□□□□ -1.34
MSX1P28360 APP-206ENST00000359726 3294 ntTSL 2 BASIC6.65□□□□□ -1.34
MSX1P28360 CDHR3-201ENST00000317716 3813 ntAPPRIS P3 TSL 1 (best) BASIC6.65□□□□□ -1.34
MSX1P28360 NUP43-201ENST00000340413 3874 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
MSX1P28360 ZNF793-207ENST00000587986 3869 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
MSX1P28360 MUSK-205ENST00000374448 2754 ntAPPRIS P1 TSL 5 BASIC6.65□□□□□ -1.34
MSX1P28360 HP1BP3-201ENST00000312239 3938 ntAPPRIS P1 TSL 2 BASIC6.65□□□□□ -1.34
MSX1P28360 GPRIN3-202ENST00000609438 14244 ntAPPRIS P1 TSL 2 BASIC6.65□□□□□ -1.34
MSX1P28360 GFPT1-202ENST00000361060 8632 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
MSX1P28360 LINC00922-203ENST00000569736 1760 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
MSX1P28360 NPIPB4-203ENST00000415645 3606 ntAPPRIS P1 TSL 5 BASIC6.65□□□□□ -1.34
MSX1P28360 VRK2-206ENST00000435505 2446 ntAPPRIS P3 TSL 1 (best) BASIC6.65□□□□□ -1.34
MSX1P28360 LINC01994-201ENST00000496220 1808 ntTSL 2 BASIC6.65□□□□□ -1.34
MSX1P28360 TEX14-203ENST00000389934 4927 ntAPPRIS P4 TSL 1 (best) BASIC6.65□□□□□ -1.34
MSX1P28360 RNU6-115P-201ENST00000364310 107 ntBASIC6.65□□□□□ -1.34
MSX1P28360 RNU4-7P-201ENST00000364758 141 ntBASIC6.65□□□□□ -1.34
MSX1P28360 RN7SKP6-201ENST00000364795 319 ntBASIC6.65□□□□□ -1.34
MSX1P28360 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
MSX1P28360 Y_RNA.395-201ENST00000383945 109 ntBASIC6.65□□□□□ -1.34
MSX1P28360 RNU6-784P-201ENST00000384330 106 ntBASIC6.65□□□□□ -1.34
MSX1P28360 IGLV5-52-201ENST00000390289 379 ntAPPRIS P1 BASIC6.65□□□□□ -1.34
MSX1P28360 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC6.65□□□□□ -1.34
MSX1P28360 AC090114.1-201ENST00000393266 448 ntBASIC6.65□□□□□ -1.34
MSX1P28360 RBMY2KP-201ENST00000418221 992 ntBASIC6.65□□□□□ -1.34
MSX1P28360 VDAC1P2-201ENST00000423609 850 ntBASIC6.65□□□□□ -1.34
MSX1P28360 IGKV1OR9-1-201ENST00000424370 284 ntBASIC6.65□□□□□ -1.34
MSX1P28360 GAPDHP69-201ENST00000425504 1008 ntBASIC6.65□□□□□ -1.34
MSX1P28360 RPS7P5-201ENST00000441482 581 ntBASIC6.65□□□□□ -1.34
MSX1P28360 AC019080.2-201ENST00000453859 394 ntBASIC6.65□□□□□ -1.34
MSX1P28360 CBX5P1-201ENST00000468470 561 ntBASIC6.65□□□□□ -1.34
MSX1P28360 AC066616.1-201ENST00000486795 413 ntBASIC6.65□□□□□ -1.34
MSX1P28360 AC008770.1-202ENST00000495324 516 ntTSL 2 BASIC6.65□□□□□ -1.34
MSX1P28360 AC108693.1-201ENST00000496068 432 ntBASIC6.65□□□□□ -1.34
MSX1P28360 RN7SL612P-201ENST00000497704 295 ntBASIC6.65□□□□□ -1.34
MSX1P28360 AC092546.1-202ENST00000505628 499 ntTSL 2 BASIC6.65□□□□□ -1.34
MSX1P28360 AC021220.1-201ENST00000507445 630 ntBASIC6.65□□□□□ -1.34
MSX1P28360 AC011405.1-204ENST00000512875 731 ntTSL 5 BASIC6.65□□□□□ -1.34
MSX1P28360 AC105417.1-201ENST00000514691 285 ntBASIC6.65□□□□□ -1.34
MSX1P28360 AP000442.2-201ENST00000531108 440 ntTSL 3 BASIC6.65□□□□□ -1.34
MSX1P28360 PHBP2-201ENST00000532859 806 ntBASIC6.65□□□□□ -1.34
MSX1P28360 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC6.65□□□□□ -1.34
MSX1P28360 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC6.65□□□□□ -1.34
MSX1P28360 MT1B-202ENST00000562399 351 ntTSL 3 BASIC6.65□□□□□ -1.34
MSX1P28360 AC138811.1-201ENST00000569096 361 ntTSL 3 BASIC6.65□□□□□ -1.34
MSX1P28360 ZNF43-209ENST00000598288 560 ntTSL 4 BASIC6.65□□□□□ -1.34
MSX1P28360 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC6.65□□□□□ -1.34
MSX1P28360 CTHRC1P1-201ENST00000605383 469 ntBASIC6.65□□□□□ -1.34
MSX1P28360 AC097641.3-201ENST00000613523 464 ntBASIC6.65□□□□□ -1.34
MSX1P28360 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC6.65□□□□□ -1.34
MSX1P28360 OR6Y1-203ENST00000641622 5128 ntAPPRIS P1 BASIC6.65□□□□□ -1.34
MSX1P28360 CDC73-204ENST00000635846 3987 ntTSL 5 BASIC6.65□□□□□ -1.35
MSX1P28360 ANKRD31-201ENST00000274361 6036 ntAPPRIS P2 TSL 5 BASIC6.65□□□□□ -1.35
MSX1P28360 PRLR-219ENST00000619676 1402 ntTSL 5 BASIC6.65□□□□□ -1.35
MSX1P28360 TC2N-202ENST00000360594 3751 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.35
MSX1P28360 LDB2-216ENST00000515064 2295 ntAPPRIS ALT1 TSL 2 BASIC6.65□□□□□ -1.35
MSX1P28360 RIOK3P1-201ENST00000418778 1528 ntBASIC6.65□□□□□ -1.35
MSX1P28360 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC6.65□□□□□ -1.35
MSX1P28360 AC126755.2-201ENST00000545114 1522 ntTSL 1 (best) BASIC6.65□□□□□ -1.35
MSX1P28360 ZNF227-213ENST00000621083 3055 ntAPPRIS P1 TSL 2 BASIC6.65□□□□□ -1.35
MSX1P28360 DNAJC15-201ENST00000379221 7853 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.35
MSX1P28360 PSMD6-AS2-201ENST00000472046 2456 ntTSL 2 BASIC6.65□□□□□ -1.35
MSX1P28360 ATXN3-204ENST00000429774 6713 ntTSL 1 (best) BASIC6.65□□□□□ -1.35
MSX1P28360 BCO2-203ENST00000438022 2598 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
MSX1P28360 SEC24D-211ENST00000511481 2626 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
MSX1P28360 RPGRIP1L-202ENST00000379925 5297 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
MSX1P28360 CUBNP3-201ENST00000457461 1784 ntBASIC6.64□□□□□ -1.35
MSX1P28360 ZNF214-201ENST00000278314 2681 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
MSX1P28360 SAMMSON-222ENST00000641901 2727 ntBASIC6.64□□□□□ -1.35
MSX1P28360 YES1-203ENST00000577961 4554 ntTSL 5 BASIC6.64□□□□□ -1.35
MSX1P28360 CD46-204ENST00000357714 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC6.64□□□□□ -1.35
MSX1P28360 CDH18-207ENST00000507958 3542 ntAPPRIS P1 TSL 2 BASIC6.64□□□□□ -1.35
MSX1P28360 Z99129.4-201ENST00000624649 2435 ntBASIC6.64□□□□□ -1.35
MSX1P28360 DEFB4A-201ENST00000302247 380 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
MSX1P28360 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC6.64□□□□□ -1.35
MSX1P28360 RNU6-1297P-201ENST00000384415 104 ntBASIC6.64□□□□□ -1.35
MSX1P28360 MIR568-201ENST00000385036 95 ntBASIC6.64□□□□□ -1.35
MSX1P28360 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC6.64□□□□□ -1.35
MSX1P28360 AP004243.1-202ENST00000398983 969 ntTSL 5 BASIC6.64□□□□□ -1.35
MSX1P28360 RPL7P25-201ENST00000404151 721 ntBASIC6.64□□□□□ -1.35
MSX1P28360 LINC01384-201ENST00000422494 659 ntTSL 3 BASIC6.64□□□□□ -1.35
MSX1P28360 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC6.64□□□□□ -1.35
MSX1P28360 LINC01506-201ENST00000432148 495 ntTSL 2 BASIC6.64□□□□□ -1.35
MSX1P28360 AC013403.1-201ENST00000436954 263 ntBASIC6.64□□□□□ -1.35
MSX1P28360 AC005808.1-201ENST00000444112 381 ntTSL 2 BASIC6.64□□□□□ -1.35
MSX1P28360 AL356133.1-201ENST00000444762 372 ntBASIC6.64□□□□□ -1.35
MSX1P28360 MEMO1P4-201ENST00000453590 386 ntBASIC6.64□□□□□ -1.35
MSX1P28360 AC079193.1-201ENST00000460497 588 ntBASIC6.64□□□□□ -1.35
MSX1P28360 RN7SL456P-201ENST00000469290 295 ntBASIC6.64□□□□□ -1.35
MSX1P28360 RN7SL259P-201ENST00000478499 253 ntBASIC6.64□□□□□ -1.35
MSX1P28360 AC025271.1-201ENST00000485045 429 ntBASIC6.64□□□□□ -1.35
MSX1P28360 RPL7L1P7-201ENST00000509986 724 ntBASIC6.64□□□□□ -1.35
MSX1P28360 MRPS5P3-201ENST00000515577 166 ntBASIC6.64□□□□□ -1.35
MSX1P28360 RNU6-559P-201ENST00000516151 98 ntBASIC6.64□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 95.6 ms