Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 EOGT-209ENST00000540955 1332 ntTSL 2 BASIC7.72□□□□□ -1.17
COL9A1P20849 STEAP2-205ENST00000394629 2261 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
COL9A1P20849 AL355916.1-202ENST00000508827 5103 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
COL9A1P20849 AC087045.3-201ENST00000623046 2468 ntBASIC7.72□□□□□ -1.17
COL9A1P20849 STXBP5-204ENST00000367481 9177 ntAPPRIS P3 TSL 1 (best) BASIC7.72□□□□□ -1.17
COL9A1P20849 SGMS2-202ENST00000394684 6149 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
COL9A1P20849 RIOK2-202ENST00000508447 2149 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
COL9A1P20849 CCDC149-204ENST00000504487 3869 ntAPPRIS ALT2 TSL 2 BASIC7.72□□□□□ -1.17
COL9A1P20849 HBP1-208ENST00000468410 2704 ntAPPRIS P1 TSL 2 BASIC7.72□□□□□ -1.17
COL9A1P20849 OPCML-203ENST00000524381 6424 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
COL9A1P20849 XIAP-202ENST00000371199 8591 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
COL9A1P20849 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC7.72□□□□□ -1.17
COL9A1P20849 OR2A4-201ENST00000315453 1758 ntAPPRIS P1 BASIC7.71□□□□□ -1.17
COL9A1P20849 EML5-201ENST00000380664 5910 ntTSL 5 BASIC7.71□□□□□ -1.17
COL9A1P20849 AC011369.1-201ENST00000517408 2181 ntTSL 3 BASIC7.71□□□□□ -1.17
COL9A1P20849 PPARGC1A-206ENST00000507380 2385 ntTSL 2 BASIC7.71□□□□□ -1.17
COL9A1P20849 MATR3-232ENST00000502929 4373 ntTSL 2 BASIC7.71□□□□□ -1.17
COL9A1P20849 KCNMA1-273ENST00000639913 12071 ntAPPRIS ALT2 TSL 5 BASIC7.71□□□□□ -1.17
COL9A1P20849 MGAT5-202ENST00000409645 8252 ntAPPRIS P1 TSL 5 BASIC7.71□□□□□ -1.17
COL9A1P20849 TRMT10A-202ENST00000394876 1638 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.17
COL9A1P20849 TMOD1-203ENST00000395211 3259 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.17
COL9A1P20849 GOSR2-215ENST00000638374 2683 ntTSL 5 BASIC7.71□□□□□ -1.17
COL9A1P20849 MSN-201ENST00000360270 3944 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.17
COL9A1P20849 EPB41L1-201ENST00000202028 3514 ntTSL 1 (best) BASIC7.71□□□□□ -1.17
COL9A1P20849 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC7.71□□□□□ -1.18
COL9A1P20849 AC112719.2-201ENST00000501239 1685 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
COL9A1P20849 SLC7A2-201ENST00000004531 7560 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
COL9A1P20849 RPL7-201ENST00000352983 1101 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.18
COL9A1P20849 Y_RNA.180-201ENST00000363867 113 ntBASIC7.71□□□□□ -1.18
COL9A1P20849 RN7SKP237-201ENST00000364663 301 ntBASIC7.71□□□□□ -1.18
COL9A1P20849 Y_RNA.367-201ENST00000365544 101 ntBASIC7.71□□□□□ -1.18
COL9A1P20849 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC7.71□□□□□ -1.18
COL9A1P20849 RNU6-713P-201ENST00000384761 107 ntBASIC7.71□□□□□ -1.18
COL9A1P20849 MIR454-201ENST00000390180 115 ntBASIC7.71□□□□□ -1.18
COL9A1P20849 RNA5SP23-201ENST00000391006 105 ntBASIC7.71□□□□□ -1.18
COL9A1P20849 ZMYND8-207ENST00000396281 5511 ntAPPRIS ALT2 TSL 2 BASIC7.71□□□□□ -1.18
COL9A1P20849 AL360182.1-201ENST00000397433 468 ntBASIC7.71□□□□□ -1.18
COL9A1P20849 AL359715.1-201ENST00000404330 555 ntBASIC7.71□□□□□ -1.18
COL9A1P20849 U3.31-201ENST00000408113 216 ntBASIC7.71□□□□□ -1.18
COL9A1P20849 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC7.71□□□□□ -1.18
COL9A1P20849 PMS2P3-203ENST00000422064 567 ntTSL 5 BASIC7.71□□□□□ -1.18
COL9A1P20849 PTPN2P1-201ENST00000423212 1072 ntBASIC7.71□□□□□ -1.18
COL9A1P20849 RPL7L1P10-201ENST00000427790 463 ntBASIC7.71□□□□□ -1.18
COL9A1P20849 MORF4-201ENST00000447135 971 ntBASIC7.71□□□□□ -1.18
COL9A1P20849 RPL21P71-201ENST00000465598 459 ntBASIC7.71□□□□□ -1.18
COL9A1P20849 RN7SL83P-201ENST00000468131 297 ntBASIC7.71□□□□□ -1.18
COL9A1P20849 RPL7L1P8-201ENST00000469911 741 ntBASIC7.71□□□□□ -1.18
COL9A1P20849 CBX1-205ENST00000495350 550 ntTSL 2 BASIC7.71□□□□□ -1.18
COL9A1P20849 LINC02513-201ENST00000503465 500 ntTSL 2 BASIC7.71□□□□□ -1.18
COL9A1P20849 RNU6-1023P-201ENST00000516137 106 ntBASIC7.71□□□□□ -1.18
COL9A1P20849 RNU6-1213P-201ENST00000517075 94 ntBASIC7.71□□□□□ -1.18
COL9A1P20849 AC022509.3-201ENST00000535914 436 ntTSL 3 BASIC7.71□□□□□ -1.18
COL9A1P20849 AC006512.2-201ENST00000543250 486 ntBASIC7.71□□□□□ -1.18
COL9A1P20849 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC7.71□□□□□ -1.18
COL9A1P20849 AL136018.1-202ENST00000555300 488 ntTSL 5 BASIC7.71□□□□□ -1.18
COL9A1P20849 AC069061.2-201ENST00000580686 480 ntTSL 3 BASIC7.71□□□□□ -1.18
COL9A1P20849 RN7SL230P-201ENST00000580835 303 ntBASIC7.71□□□□□ -1.18
COL9A1P20849 ANKRD20A19P-203ENST00000602724 295 ntBASIC7.71□□□□□ -1.18
COL9A1P20849 AC096772.1-201ENST00000609146 564 ntBASIC7.71□□□□□ -1.18
COL9A1P20849 AC244517.6-202ENST00000623884 566 ntAPPRIS P1 TSL 4 BASIC7.71□□□□□ -1.18
COL9A1P20849 AC111152.1-202ENST00000635848 339 ntBASIC7.71□□□□□ -1.18
COL9A1P20849 DLG1-202ENST00000357674 4931 ntAPPRIS ALT1 TSL 1 (best) BASIC7.71□□□□□ -1.18
COL9A1P20849 ZNF611-219ENST00000602162 3299 ntTSL 2 BASIC7.71□□□□□ -1.18
COL9A1P20849 RBBP5-201ENST00000264515 4404 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.18
COL9A1P20849 ZNF195-230ENST00000620374 3342 ntAPPRIS ALT2 TSL 5 BASIC7.71□□□□□ -1.18
COL9A1P20849 TROVE2-201ENST00000367441 1791 ntAPPRIS P3 TSL 1 (best) BASIC7.71□□□□□ -1.18
COL9A1P20849 LINC00299-201ENST00000430192 1760 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
COL9A1P20849 OSGEPL1-207ENST00000522700 1779 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.18
COL9A1P20849 HSD17B4-220ENST00000513628 2225 ntTSL 2 BASIC7.71□□□□□ -1.18
COL9A1P20849 SLC7A2-202ENST00000398090 7557 ntAPPRIS P3 TSL 1 (best) BASIC7.71□□□□□ -1.18
COL9A1P20849 ZBTB40-201ENST00000374651 8368 ntAPPRIS ALT2 TSL 1 (best) BASIC7.71□□□□□ -1.18
COL9A1P20849 MAPK10-248ENST00000640490 2715 ntTSL 5 BASIC7.71□□□□□ -1.18
COL9A1P20849 SORBS1-212ENST00000371249 5927 ntAPPRIS P3 TSL 1 (best) BASIC7.71□□□□□ -1.18
COL9A1P20849 MAP9-201ENST00000311277 7333 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.18
COL9A1P20849 MAP7D3-203ENST00000370661 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC7.71□□□□□ -1.18
COL9A1P20849 MAP4-209ENST00000434267 2772 ntTSL 2 BASIC7.71□□□□□ -1.18
COL9A1P20849 DNAH10-209ENST00000614082 3484 ntTSL 5 BASIC7.71□□□□□ -1.18
COL9A1P20849 TNPO3-201ENST00000265388 4153 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
COL9A1P20849 SORCS1-202ENST00000344440 3009 ntTSL 5 BASIC7.7□□□□□ -1.18
COL9A1P20849 KCNJ15-221ENST00000613499 3049 ntAPPRIS P1 TSL 4 BASIC7.7□□□□□ -1.18
COL9A1P20849 LIMA1-216ENST00000552909 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC7.7□□□□□ -1.18
COL9A1P20849 TRIM59-208ENST00000543469 4615 ntTSL 5 BASIC7.7□□□□□ -1.18
COL9A1P20849 AC012360.3-201ENST00000610036 3449 ntBASIC7.7□□□□□ -1.18
COL9A1P20849 LRRC37A6P-202ENST00000448648 5444 ntBASIC7.7□□□□□ -1.18
COL9A1P20849 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC7.7□□□□□ -1.18
COL9A1P20849 LINC01132-201ENST00000437601 3793 ntTSL 4 BASIC7.7□□□□□ -1.18
COL9A1P20849 ZNF3-202ENST00000299667 2799 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
COL9A1P20849 MTND5P7-201ENST00000413558 1798 ntBASIC7.7□□□□□ -1.18
COL9A1P20849 AL139276.1-201ENST00000311910 1001 ntBASIC7.7□□□□□ -1.18
COL9A1P20849 BSPH1-201ENST00000344839 654 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
COL9A1P20849 RNU6-200P-201ENST00000364743 107 ntBASIC7.7□□□□□ -1.18
COL9A1P20849 TRAV8-3-201ENST00000390435 341 ntAPPRIS P1 BASIC7.7□□□□□ -1.18
COL9A1P20849 RNU6-328P-201ENST00000390887 106 ntBASIC7.7□□□□□ -1.18
COL9A1P20849 AL353133.1-201ENST00000407695 401 ntBASIC7.7□□□□□ -1.18
COL9A1P20849 REG3G-203ENST00000409471 575 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
COL9A1P20849 RNU2-29P-201ENST00000410423 189 ntBASIC7.7□□□□□ -1.18
COL9A1P20849 Y_RNA.625-201ENST00000411256 107 ntBASIC7.7□□□□□ -1.18
COL9A1P20849 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC7.7□□□□□ -1.18
COL9A1P20849 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC7.7□□□□□ -1.18
COL9A1P20849 FO393401.1-203ENST00000416260 486 ntTSL 5 BASIC7.7□□□□□ -1.18
Retrieved 100 of 98,524 protein–RNA pairs in 85.1 ms