Protein–RNA interactions for Protein: P31277

HOXD11, Homeobox protein Hox-D11, humanhuman

Predicted RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD11P31277 AC068234.2-201ENST00000619646 522 ntBASIC9.43□□□□□ -0.9
HOXD11P31277 AL355480.1-201ENST00000629041 99 ntBASIC9.43□□□□□ -0.9
HOXD11P31277 AC008543.1-201ENST00000344893 3383 ntTSL 2 BASIC9.43□□□□□ -0.9
HOXD11P31277 TMPRSS4-AS1-204ENST00000636151 3397 ntAPPRIS P1 TSL 5 BASIC9.43□□□□□ -0.9
HOXD11P31277 TREML2-201ENST00000483722 3302 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
HOXD11P31277 SF3B2-206ENST00000528302 3254 ntTSL 5 BASIC9.43□□□□□ -0.9
HOXD11P31277 KIFAP3-201ENST00000361580 2957 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
HOXD11P31277 FHL1-204ENST00000370683 2565 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
HOXD11P31277 MAPK8-207ENST00000395611 5844 ntAPPRIS ALT1 TSL 2 BASIC9.43□□□□□ -0.9
HOXD11P31277 ZNF439-203ENST00000455282 2408 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
HOXD11P31277 CHN2-202ENST00000409041 2375 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
HOXD11P31277 ZNF726-201ENST00000322487 2330 ntAPPRIS P1 TSL 5 BASIC9.43□□□□□ -0.9
HOXD11P31277 ERMARD-203ENST00000366773 2141 ntAPPRIS P1 TSL 2 BASIC9.43□□□□□ -0.9
HOXD11P31277 MXRA7-207ENST00000592148 3510 ntAPPRIS ALT2 TSL 1 (best) BASIC9.43□□□□□ -0.9
HOXD11P31277 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC9.43□□□□□ -0.9
HOXD11P31277 AC092079.1-201ENST00000558620 1985 ntBASIC9.43□□□□□ -0.9
HOXD11P31277 TBC1D5-209ENST00000429383 3156 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
HOXD11P31277 RPGR-201ENST00000318842 3108 ntAPPRIS P3 TSL 1 (best) BASIC9.42□□□□□ -0.9
HOXD11P31277 CD59-203ENST00000415002 1878 ntAPPRIS P2 TSL 1 (best) BASIC9.42□□□□□ -0.9
HOXD11P31277 NUP85-210ENST00000579298 1890 ntTSL 5 BASIC9.42□□□□□ -0.9
HOXD11P31277 NAA16-201ENST00000379406 4347 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
HOXD11P31277 SRSF10-207ENST00000453840 1808 ntTSL 1 (best) BASIC9.42□□□□□ -0.9
HOXD11P31277 FANCB-202ENST00000398334 3008 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
HOXD11P31277 ZNF772-201ENST00000343280 5419 ntAPPRIS P3 TSL 1 (best) BASIC9.42□□□□□ -0.9
HOXD11P31277 CC2D2A-202ENST00000424120 5249 ntAPPRIS P3 TSL 5 BASIC9.42□□□□□ -0.9
HOXD11P31277 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
HOXD11P31277 HERC3-202ENST00000402738 4974 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
HOXD11P31277 TDGF1P3-202ENST00000602699 2710 ntBASIC9.42□□□□□ -0.9
HOXD11P31277 ZNF248-208ENST00000611278 4204 ntTSL 1 (best) BASIC9.42□□□□□ -0.9
HOXD11P31277 ELF5-201ENST00000257832 2321 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
HOXD11P31277 ESF1-201ENST00000202816 3216 ntAPPRIS P1 TSL 5 BASIC9.42□□□□□ -0.9
HOXD11P31277 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC9.42□□□□□ -0.9
HOXD11P31277 ABCC11-203ENST00000394747 4862 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
HOXD11P31277 TMEM136-204ENST00000529187 3930 ntTSL 1 (best) BASIC9.42□□□□□ -0.9
HOXD11P31277 NVL-216ENST00000482491 3003 ntTSL 5 BASIC9.42□□□□□ -0.9
HOXD11P31277 UQCRQ-202ENST00000378667 429 ntAPPRIS P1 TSL 2 BASIC9.42□□□□□ -0.9
HOXD11P31277 RNU6-573P-201ENST00000383938 106 ntBASIC9.42□□□□□ -0.9
HOXD11P31277 RNVU1-17-201ENST00000384619 164 ntBASIC9.42□□□□□ -0.9
HOXD11P31277 MIR548A3-201ENST00000385297 97 ntBASIC9.42□□□□□ -0.9
HOXD11P31277 MIR885-201ENST00000401316 74 ntBASIC9.42□□□□□ -0.9
HOXD11P31277 Y_RNA.595-201ENST00000410403 105 ntBASIC9.42□□□□□ -0.9
HOXD11P31277 RANP8-201ENST00000444720 713 ntBASIC9.42□□□□□ -0.9
HOXD11P31277 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC9.42□□□□□ -0.9
HOXD11P31277 RN7SL496P-201ENST00000470372 290 ntBASIC9.42□□□□□ -0.9
HOXD11P31277 RN7SL737P-201ENST00000490246 282 ntBASIC9.42□□□□□ -0.9
HOXD11P31277 RNU6-914P-201ENST00000516749 109 ntBASIC9.42□□□□□ -0.9
HOXD11P31277 RPL23AP87-202ENST00000573039 466 ntBASIC9.42□□□□□ -0.9
HOXD11P31277 AP002799.1-201ENST00000623552 423 ntBASIC9.42□□□□□ -0.9
HOXD11P31277 AP000787.3-201ENST00000634407 307 ntBASIC9.42□□□□□ -0.9
HOXD11P31277 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC9.42□□□□□ -0.9
HOXD11P31277 METTL22-202ENST00000381920 4984 ntAPPRIS P2 TSL 5 BASIC9.42□□□□□ -0.9
HOXD11P31277 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC9.42□□□□□ -0.9
HOXD11P31277 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC9.42□□□□□ -0.9
HOXD11P31277 BAZ2A-214ENST00000551812 8600 ntAPPRIS P3 TSL 1 (best) BASIC9.42□□□□□ -0.9
HOXD11P31277 TPT1-214ENST00000616577 4814 ntTSL 3 BASIC9.42□□□□□ -0.9
HOXD11P31277 ACSL6-202ENST00000357096 6298 ntTSL 5 BASIC9.42□□□□□ -0.9
HOXD11P31277 RAD21L1-203ENST00000409241 1808 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
HOXD11P31277 ASXL2-202ENST00000404843 3299 ntAPPRIS ALT2 TSL 1 (best) BASIC9.42□□□□□ -0.9
HOXD11P31277 ZNF473-202ENST00000391821 4715 ntAPPRIS P3 TSL 1 (best) BASIC9.42□□□□□ -0.9
HOXD11P31277 PCDHGC4-201ENST00000306593 4623 ntAPPRIS P3 TSL 1 (best) BASIC9.42□□□□□ -0.9
HOXD11P31277 HMGCLL1-201ENST00000274901 2475 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
HOXD11P31277 ZNF502-204ENST00000449836 3173 ntAPPRIS P1 TSL 3 BASIC9.42□□□□□ -0.9
HOXD11P31277 ACLY-202ENST00000353196 4318 ntAPPRIS ALT1 TSL 5 BASIC9.42□□□□□ -0.9
HOXD11P31277 SNX19P2-201ENST00000452841 2971 ntBASIC9.42□□□□□ -0.9
HOXD11P31277 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
HOXD11P31277 GFOD2-202ENST00000602279 5507 ntTSL 1 (best) BASIC9.42□□□□□ -0.9
HOXD11P31277 SNX13-202ENST00000409604 4146 ntTSL 1 (best) BASIC9.41□□□□□ -0.9
HOXD11P31277 MFAP5-201ENST00000359478 2845 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
HOXD11P31277 USP6-205ENST00000574788 8464 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
HOXD11P31277 AC024587.1-201ENST00000505925 2157 ntBASIC9.41□□□□□ -0.9
HOXD11P31277 GPNMB-202ENST00000381990 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC9.41□□□□□ -0.9
HOXD11P31277 EDA-213ENST00000616899 4643 ntTSL 5 BASIC9.41□□□□□ -0.9
HOXD11P31277 CALCOCO2-215ENST00000509507 1512 ntTSL 2 BASIC9.41□□□□□ -0.9
HOXD11P31277 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC9.41□□□□□ -0.9
HOXD11P31277 MED12-201ENST00000333646 6977 ntAPPRIS ALT2 TSL 5 BASIC9.41□□□□□ -0.9
HOXD11P31277 AP002884.3-201ENST00000504610 2749 ntTSL 2 BASIC9.41□□□□□ -0.9
HOXD11P31277 SUN1-202ENST00000389574 3812 ntAPPRIS P3 TSL 2 BASIC9.41□□□□□ -0.9
HOXD11P31277 CORO2A-202ENST00000375077 5459 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
HOXD11P31277 PPP6R3-202ENST00000265637 4783 ntTSL 5 BASIC9.41□□□□□ -0.9
HOXD11P31277 MST1R-202ENST00000344206 4198 ntAPPRIS ALT2 TSL 5 BASIC9.41□□□□□ -0.9
HOXD11P31277 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC9.41□□□□□ -0.9
HOXD11P31277 STYK1-201ENST00000075503 2995 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
HOXD11P31277 RBMY1J-201ENST00000250831 1886 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
HOXD11P31277 CCL22-201ENST00000219235 2929 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.9
HOXD11P31277 GOSR2-218ENST00000638634 3446 ntTSL 5 BASIC9.41□□□□□ -0.9
HOXD11P31277 PDE4D-210ENST00000503258 2860 ntTSL 1 (best) BASIC9.41□□□□□ -0.9
HOXD11P31277 E2F3-202ENST00000535432 4425 ntAPPRIS ALT2 TSL 1 (best) BASIC9.41□□□□□ -0.9
HOXD11P31277 TENM2-207ENST00000520394 8034 ntTSL 1 (best) BASIC9.41□□□□□ -0.9
HOXD11P31277 OR4D5-201ENST00000307033 1095 ntAPPRIS P1 BASIC9.41□□□□□ -0.9
HOXD11P31277 RN7SKP227-201ENST00000364445 330 ntBASIC9.41□□□□□ -0.9
HOXD11P31277 RNU6-1131P-201ENST00000364955 107 ntBASIC9.41□□□□□ -0.9
HOXD11P31277 RN7SKP80-201ENST00000365188 283 ntBASIC9.41□□□□□ -0.9
HOXD11P31277 RNU6-395P-201ENST00000365662 106 ntBASIC9.41□□□□□ -0.9
HOXD11P31277 RNU6-905P-201ENST00000384434 107 ntBASIC9.41□□□□□ -0.9
HOXD11P31277 IGKV3-15-201ENST00000390252 442 ntAPPRIS P1 BASIC9.41□□□□□ -0.9
HOXD11P31277 TRBV6-1-201ENST00000390353 401 ntAPPRIS P1 BASIC9.41□□□□□ -0.9
HOXD11P31277 Y_RNA.584-201ENST00000391090 114 ntBASIC9.41□□□□□ -0.9
HOXD11P31277 AL450311.1-201ENST00000434931 576 ntTSL 4 BASIC9.41□□□□□ -0.9
HOXD11P31277 RPSAP20-201ENST00000441455 890 ntBASIC9.41□□□□□ -0.9
HOXD11P31277 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC9.41□□□□□ -0.9
Retrieved 100 of 98,524 protein–RNA pairs in 94.9 ms