Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC19.38■□□□□ 0.69
VPS9D1Q9Y2B5 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS9D1Q9Y2B5 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC19.38■□□□□ 0.69
VPS9D1Q9Y2B5 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC19.38■□□□□ 0.69
VPS9D1Q9Y2B5 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
VPS9D1Q9Y2B5 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC19.38■□□□□ 0.69
VPS9D1Q9Y2B5 PRKY-204ENST00000533551 1019 ntBASIC19.38■□□□□ 0.69
VPS9D1Q9Y2B5 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
VPS9D1Q9Y2B5 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC19.38■□□□□ 0.69
VPS9D1Q9Y2B5 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
VPS9D1Q9Y2B5 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC19.38■□□□□ 0.69
VPS9D1Q9Y2B5 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
VPS9D1Q9Y2B5 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC19.38■□□□□ 0.69
VPS9D1Q9Y2B5 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS9D1Q9Y2B5 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC19.38■□□□□ 0.69
VPS9D1Q9Y2B5 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC19.38■□□□□ 0.69
VPS9D1Q9Y2B5 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC19.38■□□□□ 0.69
VPS9D1Q9Y2B5 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC19.37■□□□□ 0.69
VPS9D1Q9Y2B5 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS9D1Q9Y2B5 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
VPS9D1Q9Y2B5 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
VPS9D1Q9Y2B5 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS9D1Q9Y2B5 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC19.37■□□□□ 0.69
VPS9D1Q9Y2B5 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS9D1Q9Y2B5 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS9D1Q9Y2B5 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC19.37■□□□□ 0.69
VPS9D1Q9Y2B5 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC19.37■□□□□ 0.69
VPS9D1Q9Y2B5 KRT8P8-201ENST00000434750 1448 ntBASIC19.37■□□□□ 0.69
VPS9D1Q9Y2B5 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS9D1Q9Y2B5 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS9D1Q9Y2B5 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
VPS9D1Q9Y2B5 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS9D1Q9Y2B5 GAS7-202ENST00000396115 929 ntTSL 5 BASIC19.37■□□□□ 0.69
VPS9D1Q9Y2B5 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
VPS9D1Q9Y2B5 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC19.37■□□□□ 0.69
VPS9D1Q9Y2B5 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC19.37■□□□□ 0.69
VPS9D1Q9Y2B5 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC19.37■□□□□ 0.69
VPS9D1Q9Y2B5 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
VPS9D1Q9Y2B5 KLF13-207ENST00000560473 489 ntTSL 3 BASIC19.37■□□□□ 0.69
VPS9D1Q9Y2B5 KLF2-202ENST00000592003 564 ntTSL 3 BASIC19.37■□□□□ 0.69
VPS9D1Q9Y2B5 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC19.37■□□□□ 0.69
VPS9D1Q9Y2B5 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
VPS9D1Q9Y2B5 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
VPS9D1Q9Y2B5 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
VPS9D1Q9Y2B5 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC19.37■□□□□ 0.69
VPS9D1Q9Y2B5 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS9D1Q9Y2B5 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
VPS9D1Q9Y2B5 Z82202.1-201ENST00000623446 1880 ntBASIC19.37■□□□□ 0.69
VPS9D1Q9Y2B5 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
VPS9D1Q9Y2B5 AC007952.6-201ENST00000573168 2673 ntBASIC19.37■□□□□ 0.69
VPS9D1Q9Y2B5 AC003957.1-201ENST00000625108 2673 ntBASIC19.37■□□□□ 0.69
VPS9D1Q9Y2B5 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC19.36■□□□□ 0.69
VPS9D1Q9Y2B5 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
VPS9D1Q9Y2B5 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC19.36■□□□□ 0.69
VPS9D1Q9Y2B5 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS9D1Q9Y2B5 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
VPS9D1Q9Y2B5 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS9D1Q9Y2B5 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
VPS9D1Q9Y2B5 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS9D1Q9Y2B5 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS9D1Q9Y2B5 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS9D1Q9Y2B5 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS9D1Q9Y2B5 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC19.36■□□□□ 0.69
VPS9D1Q9Y2B5 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC19.36■□□□□ 0.69
VPS9D1Q9Y2B5 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC19.36■□□□□ 0.69
VPS9D1Q9Y2B5 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS9D1Q9Y2B5 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
VPS9D1Q9Y2B5 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS9D1Q9Y2B5 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
VPS9D1Q9Y2B5 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
VPS9D1Q9Y2B5 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC19.36■□□□□ 0.69
VPS9D1Q9Y2B5 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
VPS9D1Q9Y2B5 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC19.35■□□□□ 0.69
VPS9D1Q9Y2B5 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC19.35■□□□□ 0.69
VPS9D1Q9Y2B5 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VPS9D1Q9Y2B5 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
VPS9D1Q9Y2B5 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC19.35■□□□□ 0.69
VPS9D1Q9Y2B5 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
VPS9D1Q9Y2B5 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
VPS9D1Q9Y2B5 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
VPS9D1Q9Y2B5 TUBB8P6-201ENST00000436895 1288 ntBASIC19.35■□□□□ 0.69
VPS9D1Q9Y2B5 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC19.35■□□□□ 0.69
VPS9D1Q9Y2B5 KRT18P16-201ENST00000510337 1294 ntBASIC19.35■□□□□ 0.69
VPS9D1Q9Y2B5 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC19.35■□□□□ 0.69
VPS9D1Q9Y2B5 AP003097.1-201ENST00000530657 1135 ntBASIC19.35■□□□□ 0.69
VPS9D1Q9Y2B5 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC19.35■□□□□ 0.69
VPS9D1Q9Y2B5 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC19.35■□□□□ 0.69
VPS9D1Q9Y2B5 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
VPS9D1Q9Y2B5 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
VPS9D1Q9Y2B5 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC19.35■□□□□ 0.69
VPS9D1Q9Y2B5 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
VPS9D1Q9Y2B5 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
VPS9D1Q9Y2B5 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
VPS9D1Q9Y2B5 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
VPS9D1Q9Y2B5 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
VPS9D1Q9Y2B5 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
VPS9D1Q9Y2B5 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
VPS9D1Q9Y2B5 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC19.34■□□□□ 0.69
VPS9D1Q9Y2B5 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS9D1Q9Y2B5 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 59.1 ms