Protein–RNA interactions for Protein: Q9NRR8

CDC42SE1, CDC42 small effector protein 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42SE1Q9NRR8 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
CDC42SE1Q9NRR8 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
CDC42SE1Q9NRR8 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC10.06□□□□□ -0.8
CDC42SE1Q9NRR8 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC10.06□□□□□ -0.8
CDC42SE1Q9NRR8 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
CDC42SE1Q9NRR8 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
CDC42SE1Q9NRR8 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
CDC42SE1Q9NRR8 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC10.06□□□□□ -0.8
CDC42SE1Q9NRR8 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
CDC42SE1Q9NRR8 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
CDC42SE1Q9NRR8 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC10.06□□□□□ -0.8
CDC42SE1Q9NRR8 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
CDC42SE1Q9NRR8 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
CDC42SE1Q9NRR8 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC10.06□□□□□ -0.8
CDC42SE1Q9NRR8 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC10.06□□□□□ -0.8
CDC42SE1Q9NRR8 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC10.06□□□□□ -0.8
CDC42SE1Q9NRR8 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC10.06□□□□□ -0.8
CDC42SE1Q9NRR8 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
CDC42SE1Q9NRR8 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC10.06□□□□□ -0.8
CDC42SE1Q9NRR8 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC10.06□□□□□ -0.8
CDC42SE1Q9NRR8 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC10.06□□□□□ -0.8
CDC42SE1Q9NRR8 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC10.06□□□□□ -0.8
CDC42SE1Q9NRR8 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
CDC42SE1Q9NRR8 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
CDC42SE1Q9NRR8 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC10.06□□□□□ -0.8
CDC42SE1Q9NRR8 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
CDC42SE1Q9NRR8 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
CDC42SE1Q9NRR8 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC10.05□□□□□ -0.8
CDC42SE1Q9NRR8 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
CDC42SE1Q9NRR8 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC10.05□□□□□ -0.8
CDC42SE1Q9NRR8 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC10.05□□□□□ -0.8
CDC42SE1Q9NRR8 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
CDC42SE1Q9NRR8 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC10.05□□□□□ -0.8
CDC42SE1Q9NRR8 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC10.05□□□□□ -0.8
CDC42SE1Q9NRR8 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC10.05□□□□□ -0.8
CDC42SE1Q9NRR8 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
CDC42SE1Q9NRR8 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC10.05□□□□□ -0.8
CDC42SE1Q9NRR8 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
CDC42SE1Q9NRR8 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC10.05□□□□□ -0.8
CDC42SE1Q9NRR8 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC10.05□□□□□ -0.8
CDC42SE1Q9NRR8 NKILA-202ENST00000614771 2598 ntBASIC10.05□□□□□ -0.8
CDC42SE1Q9NRR8 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC10.05□□□□□ -0.8
CDC42SE1Q9NRR8 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
CDC42SE1Q9NRR8 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
CDC42SE1Q9NRR8 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC10.05□□□□□ -0.8
CDC42SE1Q9NRR8 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
CDC42SE1Q9NRR8 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC10.05□□□□□ -0.8
CDC42SE1Q9NRR8 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
CDC42SE1Q9NRR8 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC10.05□□□□□ -0.8
CDC42SE1Q9NRR8 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC10.05□□□□□ -0.8
CDC42SE1Q9NRR8 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC10.05□□□□□ -0.8
CDC42SE1Q9NRR8 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC10.05□□□□□ -0.8
CDC42SE1Q9NRR8 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC10.05□□□□□ -0.8
CDC42SE1Q9NRR8 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC10.05□□□□□ -0.8
CDC42SE1Q9NRR8 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
CDC42SE1Q9NRR8 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
CDC42SE1Q9NRR8 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC10.05□□□□□ -0.8
CDC42SE1Q9NRR8 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC10.05□□□□□ -0.8
CDC42SE1Q9NRR8 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC10.05□□□□□ -0.8
CDC42SE1Q9NRR8 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
CDC42SE1Q9NRR8 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
CDC42SE1Q9NRR8 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
CDC42SE1Q9NRR8 ZFHX2-205ENST00000615307 1972 ntTSL 2 BASIC10.05□□□□□ -0.8
CDC42SE1Q9NRR8 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
CDC42SE1Q9NRR8 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC10.04□□□□□ -0.8
CDC42SE1Q9NRR8 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
CDC42SE1Q9NRR8 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
CDC42SE1Q9NRR8 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC10.04□□□□□ -0.8
CDC42SE1Q9NRR8 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC10.04□□□□□ -0.8
CDC42SE1Q9NRR8 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC10.04□□□□□ -0.8
CDC42SE1Q9NRR8 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
CDC42SE1Q9NRR8 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC10.04□□□□□ -0.8
CDC42SE1Q9NRR8 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
CDC42SE1Q9NRR8 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC10.04□□□□□ -0.8
CDC42SE1Q9NRR8 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC10.04□□□□□ -0.8
CDC42SE1Q9NRR8 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC10.04□□□□□ -0.8
CDC42SE1Q9NRR8 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC10.04□□□□□ -0.8
CDC42SE1Q9NRR8 CD276-203ENST00000537340 2439 ntTSL 2 BASIC10.04□□□□□ -0.8
CDC42SE1Q9NRR8 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
CDC42SE1Q9NRR8 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC10.04□□□□□ -0.8
CDC42SE1Q9NRR8 AC126755.1-201ENST00000525846 6405 ntBASIC10.04□□□□□ -0.8
CDC42SE1Q9NRR8 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
CDC42SE1Q9NRR8 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
CDC42SE1Q9NRR8 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC10.04□□□□□ -0.8
CDC42SE1Q9NRR8 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
CDC42SE1Q9NRR8 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC10.04□□□□□ -0.8
CDC42SE1Q9NRR8 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
CDC42SE1Q9NRR8 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC10.04□□□□□ -0.8
CDC42SE1Q9NRR8 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC10.04□□□□□ -0.8
CDC42SE1Q9NRR8 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC10.04□□□□□ -0.8
CDC42SE1Q9NRR8 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC10.04□□□□□ -0.8
CDC42SE1Q9NRR8 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
CDC42SE1Q9NRR8 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC10.04□□□□□ -0.8
CDC42SE1Q9NRR8 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
CDC42SE1Q9NRR8 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
CDC42SE1Q9NRR8 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC10.04□□□□□ -0.8
CDC42SE1Q9NRR8 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
CDC42SE1Q9NRR8 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC10.04□□□□□ -0.8
CDC42SE1Q9NRR8 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
CDC42SE1Q9NRR8 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms