Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC23.08■■□□□ 1.28
DDX4Q9NQI0 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
DDX4Q9NQI0 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC23.08■■□□□ 1.28
DDX4Q9NQI0 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC23.08■■□□□ 1.28
DDX4Q9NQI0 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
DDX4Q9NQI0 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
DDX4Q9NQI0 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
DDX4Q9NQI0 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC23.07■■□□□ 1.28
DDX4Q9NQI0 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC23.07■■□□□ 1.28
DDX4Q9NQI0 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC23.07■■□□□ 1.28
DDX4Q9NQI0 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC23.07■■□□□ 1.28
DDX4Q9NQI0 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
DDX4Q9NQI0 ATP5G1P1-201ENST00000448724 379 ntBASIC23.07■■□□□ 1.28
DDX4Q9NQI0 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC23.07■■□□□ 1.28
DDX4Q9NQI0 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
DDX4Q9NQI0 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC23.07■■□□□ 1.28
DDX4Q9NQI0 AC099778.1-201ENST00000568593 1911 ntBASIC23.07■■□□□ 1.28
DDX4Q9NQI0 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
DDX4Q9NQI0 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
DDX4Q9NQI0 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC23.07■■□□□ 1.28
DDX4Q9NQI0 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
DDX4Q9NQI0 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC23.06■■□□□ 1.28
DDX4Q9NQI0 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC23.06■■□□□ 1.28
DDX4Q9NQI0 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
DDX4Q9NQI0 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
DDX4Q9NQI0 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC23.06■■□□□ 1.28
DDX4Q9NQI0 AC007663.1-201ENST00000438948 1240 ntBASIC23.06■■□□□ 1.28
DDX4Q9NQI0 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
DDX4Q9NQI0 GLRB-205ENST00000512619 728 ntTSL 3 BASIC23.06■■□□□ 1.28
DDX4Q9NQI0 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC23.06■■□□□ 1.28
DDX4Q9NQI0 AL023803.3-201ENST00000615559 522 ntBASIC23.06■■□□□ 1.28
DDX4Q9NQI0 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC23.06■■□□□ 1.28
DDX4Q9NQI0 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
DDX4Q9NQI0 AC092338.2-201ENST00000568827 1415 ntBASIC23.06■■□□□ 1.28
DDX4Q9NQI0 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
DDX4Q9NQI0 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
DDX4Q9NQI0 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
DDX4Q9NQI0 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
DDX4Q9NQI0 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
DDX4Q9NQI0 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC23.05■■□□□ 1.28
DDX4Q9NQI0 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC23.05■■□□□ 1.28
DDX4Q9NQI0 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC23.05■■□□□ 1.28
DDX4Q9NQI0 TPM1-226ENST00000560959 925 ntTSL 2 BASIC23.05■■□□□ 1.28
DDX4Q9NQI0 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC23.05■■□□□ 1.28
DDX4Q9NQI0 AL138966.2-201ENST00000621997 464 ntBASIC23.05■■□□□ 1.28
DDX4Q9NQI0 AC116562.4-202ENST00000641738 218 ntBASIC23.05■■□□□ 1.28
DDX4Q9NQI0 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC23.05■■□□□ 1.28
DDX4Q9NQI0 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
DDX4Q9NQI0 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
DDX4Q9NQI0 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
DDX4Q9NQI0 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC23.05■■□□□ 1.28
DDX4Q9NQI0 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC23.04■■□□□ 1.28
DDX4Q9NQI0 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
DDX4Q9NQI0 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
DDX4Q9NQI0 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC23.04■■□□□ 1.28
DDX4Q9NQI0 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
DDX4Q9NQI0 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC23.04■■□□□ 1.28
DDX4Q9NQI0 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
DDX4Q9NQI0 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
DDX4Q9NQI0 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
DDX4Q9NQI0 HMGA1P5-201ENST00000412453 271 ntBASIC23.04■■□□□ 1.28
DDX4Q9NQI0 SLC25A1P2-201ENST00000430693 912 ntBASIC23.04■■□□□ 1.28
DDX4Q9NQI0 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
DDX4Q9NQI0 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
DDX4Q9NQI0 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
DDX4Q9NQI0 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
DDX4Q9NQI0 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC23.03■■□□□ 1.28
DDX4Q9NQI0 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC23.03■■□□□ 1.28
DDX4Q9NQI0 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
DDX4Q9NQI0 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC23.03■■□□□ 1.28
DDX4Q9NQI0 GUK1-204ENST00000366721 689 ntTSL 3 BASIC23.03■■□□□ 1.28
DDX4Q9NQI0 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC23.03■■□□□ 1.28
DDX4Q9NQI0 AC117947.1-201ENST00000427448 529 ntBASIC23.03■■□□□ 1.28
DDX4Q9NQI0 RNF146-204ENST00000476956 884 ntTSL 2 BASIC23.03■■□□□ 1.28
DDX4Q9NQI0 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC23.03■■□□□ 1.28
DDX4Q9NQI0 RMI2-205ENST00000576027 818 ntTSL 2 BASIC23.03■■□□□ 1.28
DDX4Q9NQI0 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC23.03■■□□□ 1.28
DDX4Q9NQI0 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
DDX4Q9NQI0 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
DDX4Q9NQI0 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC23.02■■□□□ 1.28
DDX4Q9NQI0 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC23.02■■□□□ 1.28
DDX4Q9NQI0 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC23.02■■□□□ 1.28
DDX4Q9NQI0 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC23.02■■□□□ 1.28
DDX4Q9NQI0 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
DDX4Q9NQI0 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC23.02■■□□□ 1.28
DDX4Q9NQI0 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC23.02■■□□□ 1.28
DDX4Q9NQI0 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
DDX4Q9NQI0 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
DDX4Q9NQI0 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
DDX4Q9NQI0 LTBR-211ENST00000543190 785 ntTSL 3 BASIC23.02■■□□□ 1.28
DDX4Q9NQI0 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
DDX4Q9NQI0 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
DDX4Q9NQI0 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
DDX4Q9NQI0 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC23.02■■□□□ 1.28
DDX4Q9NQI0 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC23.02■■□□□ 1.28
DDX4Q9NQI0 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
DDX4Q9NQI0 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC23.02■■□□□ 1.28
DDX4Q9NQI0 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
DDX4Q9NQI0 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
DDX4Q9NQI0 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms