Protein–RNA interactions for Protein: Q9HAW0

BRF2, Transcription factor IIIB 50 kDa subunit, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF2Q9HAW0 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
BRF2Q9HAW0 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
BRF2Q9HAW0 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
BRF2Q9HAW0 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
BRF2Q9HAW0 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
BRF2Q9HAW0 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
BRF2Q9HAW0 PTGES2-AS1-201ENST00000443493 2100 ntBASIC18.65■□□□□ 0.58
BRF2Q9HAW0 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
BRF2Q9HAW0 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
BRF2Q9HAW0 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
BRF2Q9HAW0 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC18.65■□□□□ 0.58
BRF2Q9HAW0 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
BRF2Q9HAW0 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
BRF2Q9HAW0 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
BRF2Q9HAW0 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC18.65■□□□□ 0.58
BRF2Q9HAW0 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
BRF2Q9HAW0 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
BRF2Q9HAW0 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC18.65■□□□□ 0.58
BRF2Q9HAW0 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
BRF2Q9HAW0 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
BRF2Q9HAW0 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC18.65■□□□□ 0.58
BRF2Q9HAW0 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC18.65■□□□□ 0.58
BRF2Q9HAW0 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC18.65■□□□□ 0.58
BRF2Q9HAW0 UNC93B5-201ENST00000530315 699 ntBASIC18.65■□□□□ 0.58
BRF2Q9HAW0 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
BRF2Q9HAW0 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
BRF2Q9HAW0 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
BRF2Q9HAW0 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
BRF2Q9HAW0 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC18.65■□□□□ 0.58
BRF2Q9HAW0 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
BRF2Q9HAW0 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC18.65■□□□□ 0.58
BRF2Q9HAW0 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
BRF2Q9HAW0 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC18.64■□□□□ 0.58
BRF2Q9HAW0 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC18.64■□□□□ 0.58
BRF2Q9HAW0 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.58
BRF2Q9HAW0 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.58
BRF2Q9HAW0 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC18.64■□□□□ 0.58
BRF2Q9HAW0 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
BRF2Q9HAW0 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
BRF2Q9HAW0 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
BRF2Q9HAW0 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC18.64■□□□□ 0.57
BRF2Q9HAW0 KRT18P16-201ENST00000510337 1294 ntBASIC18.64■□□□□ 0.57
BRF2Q9HAW0 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC18.64■□□□□ 0.57
BRF2Q9HAW0 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
BRF2Q9HAW0 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
BRF2Q9HAW0 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
BRF2Q9HAW0 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC18.64■□□□□ 0.57
BRF2Q9HAW0 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
BRF2Q9HAW0 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
BRF2Q9HAW0 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC18.64■□□□□ 0.57
BRF2Q9HAW0 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC18.64■□□□□ 0.57
BRF2Q9HAW0 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
BRF2Q9HAW0 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
BRF2Q9HAW0 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC18.63■□□□□ 0.57
BRF2Q9HAW0 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
BRF2Q9HAW0 ANKRD18DP-204ENST00000455355 1975 ntBASIC18.63■□□□□ 0.57
BRF2Q9HAW0 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC18.63■□□□□ 0.57
BRF2Q9HAW0 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
BRF2Q9HAW0 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
BRF2Q9HAW0 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
BRF2Q9HAW0 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
BRF2Q9HAW0 ID1-201ENST00000376105 1233 ntBASIC18.63■□□□□ 0.57
BRF2Q9HAW0 POM121L13P-201ENST00000422362 380 ntBASIC18.63■□□□□ 0.57
BRF2Q9HAW0 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC18.63■□□□□ 0.57
BRF2Q9HAW0 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC18.63■□□□□ 0.57
BRF2Q9HAW0 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
BRF2Q9HAW0 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC18.63■□□□□ 0.57
BRF2Q9HAW0 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC18.63■□□□□ 0.57
BRF2Q9HAW0 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
BRF2Q9HAW0 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
BRF2Q9HAW0 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
BRF2Q9HAW0 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
BRF2Q9HAW0 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
BRF2Q9HAW0 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
BRF2Q9HAW0 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC18.62■□□□□ 0.57
BRF2Q9HAW0 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
BRF2Q9HAW0 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
BRF2Q9HAW0 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
BRF2Q9HAW0 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
BRF2Q9HAW0 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
BRF2Q9HAW0 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
BRF2Q9HAW0 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
BRF2Q9HAW0 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC18.62■□□□□ 0.57
BRF2Q9HAW0 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC18.62■□□□□ 0.57
BRF2Q9HAW0 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC18.62■□□□□ 0.57
BRF2Q9HAW0 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC18.62■□□□□ 0.57
BRF2Q9HAW0 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC18.62■□□□□ 0.57
BRF2Q9HAW0 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
BRF2Q9HAW0 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC18.62■□□□□ 0.57
BRF2Q9HAW0 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
BRF2Q9HAW0 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC18.62■□□□□ 0.57
BRF2Q9HAW0 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
BRF2Q9HAW0 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
BRF2Q9HAW0 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
BRF2Q9HAW0 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC18.62■□□□□ 0.57
BRF2Q9HAW0 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC18.61■□□□□ 0.57
BRF2Q9HAW0 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC18.61■□□□□ 0.57
BRF2Q9HAW0 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
BRF2Q9HAW0 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
BRF2Q9HAW0 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms