Protein–RNA interactions for Protein: Q8N8U3

RTL3, Retrotransposon Gag-like protein 3, humanhuman

Known RBP Predictions only

Length 475 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL3Q8N8U3 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.03■□□□□ 0.8
RTL3Q8N8U3 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
RTL3Q8N8U3 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC20.03■□□□□ 0.8
RTL3Q8N8U3 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
RTL3Q8N8U3 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC20.03■□□□□ 0.8
RTL3Q8N8U3 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC20.03■□□□□ 0.8
RTL3Q8N8U3 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
RTL3Q8N8U3 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
RTL3Q8N8U3 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC20.03■□□□□ 0.8
RTL3Q8N8U3 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
RTL3Q8N8U3 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC20.03■□□□□ 0.8
RTL3Q8N8U3 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC20.03■□□□□ 0.8
RTL3Q8N8U3 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
RTL3Q8N8U3 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC20.03■□□□□ 0.8
RTL3Q8N8U3 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC20.03■□□□□ 0.8
RTL3Q8N8U3 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
RTL3Q8N8U3 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
RTL3Q8N8U3 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
RTL3Q8N8U3 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
RTL3Q8N8U3 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC20.02■□□□□ 0.8
RTL3Q8N8U3 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC20.02■□□□□ 0.8
RTL3Q8N8U3 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC20.02■□□□□ 0.8
RTL3Q8N8U3 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC20.02■□□□□ 0.8
RTL3Q8N8U3 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC20.02■□□□□ 0.8
RTL3Q8N8U3 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
RTL3Q8N8U3 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC20.02■□□□□ 0.8
RTL3Q8N8U3 RARRES2P10-201ENST00000564312 460 ntBASIC20.02■□□□□ 0.8
RTL3Q8N8U3 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC20.02■□□□□ 0.8
RTL3Q8N8U3 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
RTL3Q8N8U3 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC20.02■□□□□ 0.8
RTL3Q8N8U3 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
RTL3Q8N8U3 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
RTL3Q8N8U3 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC20.02■□□□□ 0.8
RTL3Q8N8U3 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC20.02■□□□□ 0.79
RTL3Q8N8U3 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.79
RTL3Q8N8U3 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
RTL3Q8N8U3 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC20.01■□□□□ 0.79
RTL3Q8N8U3 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
RTL3Q8N8U3 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
RTL3Q8N8U3 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
RTL3Q8N8U3 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC20.01■□□□□ 0.79
RTL3Q8N8U3 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
RTL3Q8N8U3 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
RTL3Q8N8U3 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
RTL3Q8N8U3 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
RTL3Q8N8U3 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
RTL3Q8N8U3 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
RTL3Q8N8U3 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
RTL3Q8N8U3 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
RTL3Q8N8U3 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC20.01■□□□□ 0.79
RTL3Q8N8U3 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC20.01■□□□□ 0.79
RTL3Q8N8U3 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC20.01■□□□□ 0.79
RTL3Q8N8U3 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
RTL3Q8N8U3 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
RTL3Q8N8U3 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
RTL3Q8N8U3 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
RTL3Q8N8U3 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
RTL3Q8N8U3 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
RTL3Q8N8U3 HTR7P1-201ENST00000538670 1336 ntBASIC20.01■□□□□ 0.79
RTL3Q8N8U3 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
RTL3Q8N8U3 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
RTL3Q8N8U3 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC20■□□□□ 0.79
RTL3Q8N8U3 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
RTL3Q8N8U3 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
RTL3Q8N8U3 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC20■□□□□ 0.79
RTL3Q8N8U3 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
RTL3Q8N8U3 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC20■□□□□ 0.79
RTL3Q8N8U3 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC20■□□□□ 0.79
RTL3Q8N8U3 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
RTL3Q8N8U3 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
RTL3Q8N8U3 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
RTL3Q8N8U3 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC20■□□□□ 0.79
RTL3Q8N8U3 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
RTL3Q8N8U3 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
RTL3Q8N8U3 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
RTL3Q8N8U3 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
RTL3Q8N8U3 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC20■□□□□ 0.79
RTL3Q8N8U3 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC20■□□□□ 0.79
RTL3Q8N8U3 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC20■□□□□ 0.79
RTL3Q8N8U3 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC20■□□□□ 0.79
RTL3Q8N8U3 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC20■□□□□ 0.79
RTL3Q8N8U3 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
RTL3Q8N8U3 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
RTL3Q8N8U3 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC20■□□□□ 0.79
RTL3Q8N8U3 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
RTL3Q8N8U3 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
RTL3Q8N8U3 POLI-202ENST00000406285 2030 ntTSL 2 BASIC20■□□□□ 0.79
RTL3Q8N8U3 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC20■□□□□ 0.79
RTL3Q8N8U3 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC20■□□□□ 0.79
RTL3Q8N8U3 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC20■□□□□ 0.79
RTL3Q8N8U3 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
RTL3Q8N8U3 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC19.99■□□□□ 0.79
RTL3Q8N8U3 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC19.99■□□□□ 0.79
RTL3Q8N8U3 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RTL3Q8N8U3 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RTL3Q8N8U3 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
RTL3Q8N8U3 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RTL3Q8N8U3 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC19.99■□□□□ 0.79
RTL3Q8N8U3 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
RTL3Q8N8U3 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms