Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC28AQ8IWP9 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC28AQ8IWP9 EI24-211ENST00000534546 1544 ntTSL 2 BASIC16.29■□□□□ 0.2
CCDC28AQ8IWP9 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC28AQ8IWP9 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CCDC28AQ8IWP9 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
CCDC28AQ8IWP9 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC28AQ8IWP9 OR7E47P-201ENST00000546390 1422 ntBASIC16.28■□□□□ 0.2
CCDC28AQ8IWP9 EFTUD1P1-204ENST00000560401 1798 ntBASIC16.28■□□□□ 0.2
CCDC28AQ8IWP9 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
CCDC28AQ8IWP9 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC28AQ8IWP9 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC28AQ8IWP9 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC28AQ8IWP9 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
CCDC28AQ8IWP9 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC16.28■□□□□ 0.2
CCDC28AQ8IWP9 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC16.28■□□□□ 0.2
CCDC28AQ8IWP9 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC28AQ8IWP9 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
CCDC28AQ8IWP9 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC28AQ8IWP9 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC28AQ8IWP9 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC28AQ8IWP9 AC009102.2-201ENST00000606772 1639 ntBASIC16.28■□□□□ 0.2
CCDC28AQ8IWP9 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC28AQ8IWP9 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
CCDC28AQ8IWP9 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC28AQ8IWP9 AL035685.1-201ENST00000636663 812 ntBASIC16.28■□□□□ 0.2
CCDC28AQ8IWP9 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC28AQ8IWP9 FP700111.2-201ENST00000619190 1892 ntBASIC16.28■□□□□ 0.2
CCDC28AQ8IWP9 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC28AQ8IWP9 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC16.28■□□□□ 0.2
CCDC28AQ8IWP9 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC28AQ8IWP9 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
CCDC28AQ8IWP9 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC16.28■□□□□ 0.2
CCDC28AQ8IWP9 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC16.28■□□□□ 0.2
CCDC28AQ8IWP9 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
CCDC28AQ8IWP9 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC16.27■□□□□ 0.2
CCDC28AQ8IWP9 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC16.27■□□□□ 0.2
CCDC28AQ8IWP9 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC16.27■□□□□ 0.2
CCDC28AQ8IWP9 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC28AQ8IWP9 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
CCDC28AQ8IWP9 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC28AQ8IWP9 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC28AQ8IWP9 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC28AQ8IWP9 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC28AQ8IWP9 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC28AQ8IWP9 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC28AQ8IWP9 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC28AQ8IWP9 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
CCDC28AQ8IWP9 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC28AQ8IWP9 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
CCDC28AQ8IWP9 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC28AQ8IWP9 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC28AQ8IWP9 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC28AQ8IWP9 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CCDC28AQ8IWP9 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
CCDC28AQ8IWP9 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CCDC28AQ8IWP9 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC16.27■□□□□ 0.19
CCDC28AQ8IWP9 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CCDC28AQ8IWP9 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CCDC28AQ8IWP9 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.19
CCDC28AQ8IWP9 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CCDC28AQ8IWP9 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
CCDC28AQ8IWP9 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC16.27■□□□□ 0.19
CCDC28AQ8IWP9 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC28AQ8IWP9 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC28AQ8IWP9 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC28AQ8IWP9 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC16.26■□□□□ 0.19
CCDC28AQ8IWP9 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
CCDC28AQ8IWP9 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC16.26■□□□□ 0.19
CCDC28AQ8IWP9 TREX1-205ENST00000625293 1783 ntBASIC16.26■□□□□ 0.19
CCDC28AQ8IWP9 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
CCDC28AQ8IWP9 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC28AQ8IWP9 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC28AQ8IWP9 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC16.26■□□□□ 0.19
CCDC28AQ8IWP9 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
CCDC28AQ8IWP9 KRT16P3-201ENST00000439127 1283 ntBASIC16.26■□□□□ 0.19
CCDC28AQ8IWP9 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC16.26■□□□□ 0.19
CCDC28AQ8IWP9 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
CCDC28AQ8IWP9 CLTA-206ENST00000466396 695 ntTSL 2 BASIC16.26■□□□□ 0.19
CCDC28AQ8IWP9 OR2A1-AS1-204ENST00000470435 602 ntBASIC16.26■□□□□ 0.19
CCDC28AQ8IWP9 MIR6724-1-201ENST00000616420 92 ntBASIC16.26■□□□□ 0.19
CCDC28AQ8IWP9 MIR6724-2-201ENST00000616483 92 ntBASIC16.26■□□□□ 0.19
CCDC28AQ8IWP9 MIR6724-4-201ENST00000617390 92 ntBASIC16.26■□□□□ 0.19
CCDC28AQ8IWP9 MIR6724-3-201ENST00000622482 92 ntBASIC16.26■□□□□ 0.19
CCDC28AQ8IWP9 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC28AQ8IWP9 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC28AQ8IWP9 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC16.26■□□□□ 0.19
CCDC28AQ8IWP9 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC16.26■□□□□ 0.19
CCDC28AQ8IWP9 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC28AQ8IWP9 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
CCDC28AQ8IWP9 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC28AQ8IWP9 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC28AQ8IWP9 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC28AQ8IWP9 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC16.25■□□□□ 0.19
CCDC28AQ8IWP9 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC16.25■□□□□ 0.19
CCDC28AQ8IWP9 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC28AQ8IWP9 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
CCDC28AQ8IWP9 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC28AQ8IWP9 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC28AQ8IWP9 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms