Protein–RNA interactions for Protein: Q6PD62

CTR9, RNA polymerase-associated protein CTR9 homolog, humanhuman

Predictions only

Length 1,173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTR9Q6PD62 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
CTR9Q6PD62 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
CTR9Q6PD62 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CTR9Q6PD62 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CTR9Q6PD62 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
CTR9Q6PD62 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CTR9Q6PD62 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
CTR9Q6PD62 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
CTR9Q6PD62 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CTR9Q6PD62 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
CTR9Q6PD62 AC116562.2-201ENST00000507042 360 ntBASIC23.19■■□□□ 1.3
CTR9Q6PD62 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
CTR9Q6PD62 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC23.19■■□□□ 1.3
CTR9Q6PD62 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC23.19■■□□□ 1.3
CTR9Q6PD62 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CTR9Q6PD62 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC23.19■■□□□ 1.3
CTR9Q6PD62 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC23.19■■□□□ 1.3
CTR9Q6PD62 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
CTR9Q6PD62 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CTR9Q6PD62 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CTR9Q6PD62 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CTR9Q6PD62 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC23.18■■□□□ 1.3
CTR9Q6PD62 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC23.18■■□□□ 1.3
CTR9Q6PD62 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CTR9Q6PD62 AC004980.1-204ENST00000429707 299 ntBASIC23.18■■□□□ 1.3
CTR9Q6PD62 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CTR9Q6PD62 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
CTR9Q6PD62 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC23.18■■□□□ 1.3
CTR9Q6PD62 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CTR9Q6PD62 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC23.18■■□□□ 1.3
CTR9Q6PD62 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CTR9Q6PD62 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC23.18■■□□□ 1.3
CTR9Q6PD62 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC23.17■■□□□ 1.3
CTR9Q6PD62 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CTR9Q6PD62 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CTR9Q6PD62 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC23.17■■□□□ 1.3
CTR9Q6PD62 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CTR9Q6PD62 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CTR9Q6PD62 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC23.17■■□□□ 1.3
CTR9Q6PD62 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CTR9Q6PD62 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CTR9Q6PD62 MESTP1-201ENST00000404287 994 ntBASIC23.17■■□□□ 1.3
CTR9Q6PD62 NME1-207ENST00000480143 964 ntTSL 2 BASIC23.17■■□□□ 1.3
CTR9Q6PD62 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CTR9Q6PD62 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC23.17■■□□□ 1.3
CTR9Q6PD62 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
CTR9Q6PD62 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC23.17■■□□□ 1.3
CTR9Q6PD62 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC23.17■■□□□ 1.3
CTR9Q6PD62 AC073912.3-201ENST00000624414 853 ntBASIC23.17■■□□□ 1.3
CTR9Q6PD62 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
CTR9Q6PD62 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
CTR9Q6PD62 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC23.17■■□□□ 1.3
CTR9Q6PD62 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
CTR9Q6PD62 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CTR9Q6PD62 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC23.17■■□□□ 1.3
CTR9Q6PD62 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CTR9Q6PD62 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC23.16■■□□□ 1.3
CTR9Q6PD62 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
CTR9Q6PD62 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC23.16■■□□□ 1.3
CTR9Q6PD62 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
CTR9Q6PD62 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
CTR9Q6PD62 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
CTR9Q6PD62 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CTR9Q6PD62 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CTR9Q6PD62 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC23.16■■□□□ 1.3
CTR9Q6PD62 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC23.16■■□□□ 1.3
CTR9Q6PD62 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CTR9Q6PD62 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC23.16■■□□□ 1.3
CTR9Q6PD62 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC23.16■■□□□ 1.3
CTR9Q6PD62 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC23.16■■□□□ 1.3
CTR9Q6PD62 DECR2-212ENST00000627716 352 ntTSL 2 BASIC23.16■■□□□ 1.3
CTR9Q6PD62 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC23.16■■□□□ 1.3
CTR9Q6PD62 AL031985.4-201ENST00000642138 673 ntBASIC23.16■■□□□ 1.3
CTR9Q6PD62 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CTR9Q6PD62 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
CTR9Q6PD62 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC23.16■■□□□ 1.3
CTR9Q6PD62 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CTR9Q6PD62 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CTR9Q6PD62 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
CTR9Q6PD62 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CTR9Q6PD62 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC23.15■■□□□ 1.3
CTR9Q6PD62 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CTR9Q6PD62 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC23.15■■□□□ 1.3
CTR9Q6PD62 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CTR9Q6PD62 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC23.15■■□□□ 1.3
CTR9Q6PD62 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
CTR9Q6PD62 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
CTR9Q6PD62 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
CTR9Q6PD62 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC23.15■■□□□ 1.3
CTR9Q6PD62 RBM17P1-201ENST00000453646 1190 ntBASIC23.15■■□□□ 1.3
CTR9Q6PD62 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC23.15■■□□□ 1.3
CTR9Q6PD62 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC23.15■■□□□ 1.3
CTR9Q6PD62 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CTR9Q6PD62 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC23.15■■□□□ 1.3
CTR9Q6PD62 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CTR9Q6PD62 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CTR9Q6PD62 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC23.15■■□□□ 1.3
CTR9Q6PD62 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
CTR9Q6PD62 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC23.14■■□□□ 1.3
CTR9Q6PD62 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC23.14■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms