Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PTCHD3Q3KNS1 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
PTCHD3Q3KNS1 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
PTCHD3Q3KNS1 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
PTCHD3Q3KNS1 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC19.07■□□□□ 0.64
PTCHD3Q3KNS1 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
PTCHD3Q3KNS1 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
PTCHD3Q3KNS1 MAX-217ENST00000557277 728 ntTSL 3 BASIC19.07■□□□□ 0.64
PTCHD3Q3KNS1 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC19.07■□□□□ 0.64
PTCHD3Q3KNS1 MTDHP1-201ENST00000605323 784 ntBASIC19.07■□□□□ 0.64
PTCHD3Q3KNS1 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
PTCHD3Q3KNS1 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC19.07■□□□□ 0.64
PTCHD3Q3KNS1 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PTCHD3Q3KNS1 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PTCHD3Q3KNS1 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC19.07■□□□□ 0.64
PTCHD3Q3KNS1 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC19.07■□□□□ 0.64
PTCHD3Q3KNS1 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PTCHD3Q3KNS1 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC19.06■□□□□ 0.64
PTCHD3Q3KNS1 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC19.06■□□□□ 0.64
PTCHD3Q3KNS1 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
PTCHD3Q3KNS1 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PTCHD3Q3KNS1 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PTCHD3Q3KNS1 AL596275.1-201ENST00000423464 877 ntBASIC19.06■□□□□ 0.64
PTCHD3Q3KNS1 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC19.06■□□□□ 0.64
PTCHD3Q3KNS1 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC19.06■□□□□ 0.64
PTCHD3Q3KNS1 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
PTCHD3Q3KNS1 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC19.06■□□□□ 0.64
PTCHD3Q3KNS1 AL121906.2-201ENST00000621597 723 ntBASIC19.06■□□□□ 0.64
PTCHD3Q3KNS1 AL023875.1-201ENST00000640777 796 ntBASIC19.06■□□□□ 0.64
PTCHD3Q3KNS1 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
PTCHD3Q3KNS1 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PTCHD3Q3KNS1 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
PTCHD3Q3KNS1 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC19.06■□□□□ 0.64
PTCHD3Q3KNS1 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PTCHD3Q3KNS1 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PTCHD3Q3KNS1 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PTCHD3Q3KNS1 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
PTCHD3Q3KNS1 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PTCHD3Q3KNS1 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
PTCHD3Q3KNS1 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC19.05■□□□□ 0.64
PTCHD3Q3KNS1 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC19.05■□□□□ 0.64
PTCHD3Q3KNS1 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
PTCHD3Q3KNS1 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
PTCHD3Q3KNS1 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
PTCHD3Q3KNS1 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
PTCHD3Q3KNS1 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
PTCHD3Q3KNS1 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC19.05■□□□□ 0.64
PTCHD3Q3KNS1 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
PTCHD3Q3KNS1 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC19.05■□□□□ 0.64
PTCHD3Q3KNS1 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
PTCHD3Q3KNS1 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
PTCHD3Q3KNS1 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
PTCHD3Q3KNS1 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PTCHD3Q3KNS1 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
PTCHD3Q3KNS1 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
PTCHD3Q3KNS1 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PTCHD3Q3KNS1 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC19.04■□□□□ 0.64
PTCHD3Q3KNS1 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC19.04■□□□□ 0.64
PTCHD3Q3KNS1 AC007952.6-201ENST00000573168 2673 ntBASIC19.04■□□□□ 0.64
PTCHD3Q3KNS1 AC003957.1-201ENST00000625108 2673 ntBASIC19.04■□□□□ 0.64
PTCHD3Q3KNS1 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
PTCHD3Q3KNS1 ISG20-202ENST00000379224 540 ntTSL 3 BASIC19.04■□□□□ 0.64
PTCHD3Q3KNS1 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
PTCHD3Q3KNS1 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC19.04■□□□□ 0.64
PTCHD3Q3KNS1 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC19.04■□□□□ 0.64
PTCHD3Q3KNS1 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
PTCHD3Q3KNS1 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
PTCHD3Q3KNS1 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
PTCHD3Q3KNS1 AC093484.2-201ENST00000580996 2166 ntBASIC19.04■□□□□ 0.64
PTCHD3Q3KNS1 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
PTCHD3Q3KNS1 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
PTCHD3Q3KNS1 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC19.04■□□□□ 0.64
PTCHD3Q3KNS1 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
PTCHD3Q3KNS1 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC19.04■□□□□ 0.64
PTCHD3Q3KNS1 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PTCHD3Q3KNS1 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PTCHD3Q3KNS1 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
PTCHD3Q3KNS1 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC19.04■□□□□ 0.64
PTCHD3Q3KNS1 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
PTCHD3Q3KNS1 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
PTCHD3Q3KNS1 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
PTCHD3Q3KNS1 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC19.03■□□□□ 0.64
PTCHD3Q3KNS1 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
PTCHD3Q3KNS1 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
PTCHD3Q3KNS1 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
PTCHD3Q3KNS1 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
PTCHD3Q3KNS1 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
PTCHD3Q3KNS1 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
PTCHD3Q3KNS1 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
PTCHD3Q3KNS1 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC19.03■□□□□ 0.64
PTCHD3Q3KNS1 AC239809.2-201ENST00000415381 517 ntBASIC19.03■□□□□ 0.64
PTCHD3Q3KNS1 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC19.03■□□□□ 0.64
PTCHD3Q3KNS1 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
PTCHD3Q3KNS1 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC19.03■□□□□ 0.64
PTCHD3Q3KNS1 LY6E-205ENST00000519611 635 ntTSL 3 BASIC19.03■□□□□ 0.64
PTCHD3Q3KNS1 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC19.03■□□□□ 0.64
PTCHD3Q3KNS1 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC19.03■□□□□ 0.64
PTCHD3Q3KNS1 PNN-205ENST00000556530 601 ntTSL 2 BASIC19.03■□□□□ 0.64
PTCHD3Q3KNS1 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
PTCHD3Q3KNS1 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms