Protein–RNA interactions for Protein: P55289

CDH12, Cadherin-12, humanhuman

Predictions only

Length 794 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH12P55289 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
CDH12P55289 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CDH12P55289 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
CDH12P55289 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
CDH12P55289 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
CDH12P55289 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC18.16■□□□□ 0.5
CDH12P55289 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC18.16■□□□□ 0.5
CDH12P55289 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC18.16■□□□□ 0.5
CDH12P55289 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC18.16■□□□□ 0.5
CDH12P55289 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CDH12P55289 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
CDH12P55289 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC18.16■□□□□ 0.5
CDH12P55289 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC18.16■□□□□ 0.5
CDH12P55289 AC073111.5-205ENST00000641717 521 ntBASIC18.16■□□□□ 0.5
CDH12P55289 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
CDH12P55289 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC18.16■□□□□ 0.5
CDH12P55289 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CDH12P55289 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
CDH12P55289 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
CDH12P55289 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CDH12P55289 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC18.16■□□□□ 0.5
CDH12P55289 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC18.16■□□□□ 0.5
CDH12P55289 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CDH12P55289 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CDH12P55289 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
CDH12P55289 PHGDH-210ENST00000641115 1638 ntBASIC18.16■□□□□ 0.5
CDH12P55289 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
CDH12P55289 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDH12P55289 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDH12P55289 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDH12P55289 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDH12P55289 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CDH12P55289 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDH12P55289 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
CDH12P55289 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDH12P55289 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDH12P55289 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC18.15■□□□□ 0.5
CDH12P55289 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC18.15■□□□□ 0.5
CDH12P55289 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDH12P55289 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
CDH12P55289 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDH12P55289 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDH12P55289 HLA-G-202ENST00000376815 851 ntBASIC18.15■□□□□ 0.5
CDH12P55289 HLA-G-203ENST00000376818 1127 ntBASIC18.15■□□□□ 0.5
CDH12P55289 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC18.15■□□□□ 0.5
CDH12P55289 PARL-206ENST00000435888 1098 ntTSL 5 BASIC18.15■□□□□ 0.5
CDH12P55289 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDH12P55289 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC18.15■□□□□ 0.5
CDH12P55289 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDH12P55289 AC133552.2-202ENST00000575694 574 ntBASIC18.15■□□□□ 0.5
CDH12P55289 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDH12P55289 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC18.15■□□□□ 0.5
CDH12P55289 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
CDH12P55289 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDH12P55289 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CDH12P55289 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDH12P55289 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC18.15■□□□□ 0.5
CDH12P55289 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDH12P55289 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
CDH12P55289 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
CDH12P55289 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDH12P55289 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CDH12P55289 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC18.14■□□□□ 0.5
CDH12P55289 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
CDH12P55289 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.5
CDH12P55289 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC18.14■□□□□ 0.5
CDH12P55289 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC18.14■□□□□ 0.49
CDH12P55289 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CDH12P55289 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CDH12P55289 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CDH12P55289 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CDH12P55289 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC18.14■□□□□ 0.49
CDH12P55289 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC18.14■□□□□ 0.49
CDH12P55289 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CDH12P55289 CDCA4P2-201ENST00000441182 718 ntBASIC18.14■□□□□ 0.49
CDH12P55289 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC18.14■□□□□ 0.49
CDH12P55289 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC18.14■□□□□ 0.49
CDH12P55289 HES2-205ENST00000487437 968 ntTSL 3 BASIC18.14■□□□□ 0.49
CDH12P55289 ISCU-212ENST00000547005 795 ntTSL 3 BASIC18.14■□□□□ 0.49
CDH12P55289 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC18.14■□□□□ 0.49
CDH12P55289 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CDH12P55289 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC18.14■□□□□ 0.49
CDH12P55289 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CDH12P55289 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CDH12P55289 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CDH12P55289 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
CDH12P55289 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CDH12P55289 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CDH12P55289 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CDH12P55289 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC18.13■□□□□ 0.49
CDH12P55289 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CDH12P55289 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CDH12P55289 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CDH12P55289 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
CDH12P55289 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC18.13■□□□□ 0.49
CDH12P55289 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC18.13■□□□□ 0.49
CDH12P55289 LSM12P1-201ENST00000411836 588 ntBASIC18.13■□□□□ 0.49
CDH12P55289 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC18.13■□□□□ 0.49
CDH12P55289 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC18.13■□□□□ 0.49
CDH12P55289 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms