Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
MSH6P52701 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
MSH6P52701 AL121603.2-201ENST00000557373 2117 ntBASIC27.11■■□□□ 1.93
MSH6P52701 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
MSH6P52701 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC27.11■■□□□ 1.93
MSH6P52701 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC27.11■■□□□ 1.93
MSH6P52701 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC27.11■■□□□ 1.93
MSH6P52701 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
MSH6P52701 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
MSH6P52701 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
MSH6P52701 TSSC2-201ENST00000450217 709 ntBASIC27.1■■□□□ 1.93
MSH6P52701 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC27.1■■□□□ 1.93
MSH6P52701 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
MSH6P52701 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC27.1■■□□□ 1.93
MSH6P52701 MYB-221ENST00000527615 2381 ntTSL 5 BASIC27.1■■□□□ 1.93
MSH6P52701 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
MSH6P52701 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
MSH6P52701 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC27.1■■□□□ 1.93
MSH6P52701 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
MSH6P52701 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC27.09■■□□□ 1.93
MSH6P52701 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC27.09■■□□□ 1.93
MSH6P52701 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC27.09■■□□□ 1.93
MSH6P52701 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC27.09■■□□□ 1.93
MSH6P52701 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC27.09■■□□□ 1.93
MSH6P52701 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC27.09■■□□□ 1.93
MSH6P52701 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC27.09■■□□□ 1.93
MSH6P52701 AL031008.1-201ENST00000619963 541 ntBASIC27.09■■□□□ 1.93
MSH6P52701 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
MSH6P52701 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
MSH6P52701 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC27.09■■□□□ 1.93
MSH6P52701 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
MSH6P52701 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC27.09■■□□□ 1.93
MSH6P52701 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC27.09■■□□□ 1.93
MSH6P52701 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
MSH6P52701 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
MSH6P52701 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
MSH6P52701 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
MSH6P52701 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
MSH6P52701 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC27.09■■□□□ 1.93
MSH6P52701 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC27.09■■□□□ 1.93
MSH6P52701 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC27.09■■□□□ 1.93
MSH6P52701 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC27.09■■□□□ 1.93
MSH6P52701 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC27.09■■□□□ 1.93
MSH6P52701 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC27.09■■□□□ 1.93
MSH6P52701 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
MSH6P52701 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
MSH6P52701 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
MSH6P52701 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC27.08■■□□□ 1.93
MSH6P52701 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
MSH6P52701 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
MSH6P52701 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC27.08■■□□□ 1.93
MSH6P52701 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
MSH6P52701 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
MSH6P52701 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
MSH6P52701 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC27.08■■□□□ 1.93
MSH6P52701 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC27.08■■□□□ 1.93
MSH6P52701 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC27.08■■□□□ 1.93
MSH6P52701 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC27.08■■□□□ 1.92
MSH6P52701 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
MSH6P52701 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
MSH6P52701 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC27.07■■□□□ 1.92
MSH6P52701 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
MSH6P52701 AC005229.4-201ENST00000610085 2198 ntBASIC27.07■■□□□ 1.92
MSH6P52701 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC27.07■■□□□ 1.92
MSH6P52701 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC27.07■■□□□ 1.92
MSH6P52701 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
MSH6P52701 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
MSH6P52701 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC27.07■■□□□ 1.92
MSH6P52701 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC27.07■■□□□ 1.92
MSH6P52701 AL160286.2-201ENST00000567150 934 ntBASIC27.07■■□□□ 1.92
MSH6P52701 GXYLT1P4-201ENST00000613576 1192 ntBASIC27.07■■□□□ 1.92
MSH6P52701 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
MSH6P52701 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC27.07■■□□□ 1.92
MSH6P52701 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
MSH6P52701 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC27.07■■□□□ 1.92
MSH6P52701 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
MSH6P52701 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC27.06■■□□□ 1.92
MSH6P52701 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC27.06■■□□□ 1.92
MSH6P52701 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC27.06■■□□□ 1.92
MSH6P52701 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
MSH6P52701 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC27.06■■□□□ 1.92
MSH6P52701 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
MSH6P52701 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC27.06■■□□□ 1.92
MSH6P52701 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
MSH6P52701 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC27.06■■□□□ 1.92
MSH6P52701 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
MSH6P52701 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC27.06■■□□□ 1.92
MSH6P52701 DPP3P2-201ENST00000416030 1696 ntBASIC27.05■■□□□ 1.92
MSH6P52701 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
MSH6P52701 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC27.05■■□□□ 1.92
MSH6P52701 TMEM179-206ENST00000616017 1645 ntBASIC27.05■■□□□ 1.92
MSH6P52701 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC27.05■■□□□ 1.92
MSH6P52701 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC27.05■■□□□ 1.92
MSH6P52701 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC27.05■■□□□ 1.92
MSH6P52701 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC27.05■■□□□ 1.92
MSH6P52701 TBCB-205ENST00000585746 875 ntTSL 3 BASIC27.05■■□□□ 1.92
MSH6P52701 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC27.05■■□□□ 1.92
MSH6P52701 AL121672.3-201ENST00000608644 468 ntBASIC27.05■■□□□ 1.92
MSH6P52701 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC27.05■■□□□ 1.92
MSH6P52701 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC27.05■■□□□ 1.92
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms