Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
LIG3P49916 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
LIG3P49916 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
LIG3P49916 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LIG3P49916 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LIG3P49916 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC20.41■□□□□ 0.86
LIG3P49916 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC20.41■□□□□ 0.86
LIG3P49916 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LIG3P49916 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC20.41■□□□□ 0.86
LIG3P49916 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
LIG3P49916 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
LIG3P49916 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC20.41■□□□□ 0.86
LIG3P49916 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC20.41■□□□□ 0.86
LIG3P49916 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
LIG3P49916 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC20.41■□□□□ 0.86
LIG3P49916 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC20.41■□□□□ 0.86
LIG3P49916 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
LIG3P49916 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC20.41■□□□□ 0.86
LIG3P49916 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
LIG3P49916 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LIG3P49916 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LIG3P49916 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
LIG3P49916 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
LIG3P49916 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
LIG3P49916 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
LIG3P49916 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
LIG3P49916 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
LIG3P49916 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
LIG3P49916 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
LIG3P49916 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC20.4■□□□□ 0.86
LIG3P49916 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
LIG3P49916 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC20.4■□□□□ 0.86
LIG3P49916 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
LIG3P49916 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
LIG3P49916 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
LIG3P49916 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
LIG3P49916 BID-203ENST00000399765 1879 ntTSL 2 BASIC20.4■□□□□ 0.86
LIG3P49916 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
LIG3P49916 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
LIG3P49916 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
LIG3P49916 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC20.4■□□□□ 0.86
LIG3P49916 HES2-205ENST00000487437 968 ntTSL 3 BASIC20.4■□□□□ 0.86
LIG3P49916 NXN-202ENST00000537628 1340 ntTSL 3 BASIC20.4■□□□□ 0.86
LIG3P49916 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC20.4■□□□□ 0.86
LIG3P49916 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC20.4■□□□□ 0.86
LIG3P49916 MIR4651-201ENST00000582622 73 ntBASIC20.4■□□□□ 0.86
LIG3P49916 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
LIG3P49916 AL356652.1-201ENST00000615962 565 ntBASIC20.4■□□□□ 0.86
LIG3P49916 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC20.4■□□□□ 0.86
LIG3P49916 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC20.4■□□□□ 0.86
LIG3P49916 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
LIG3P49916 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
LIG3P49916 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
LIG3P49916 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC20.39■□□□□ 0.86
LIG3P49916 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC20.39■□□□□ 0.86
LIG3P49916 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
LIG3P49916 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
LIG3P49916 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
LIG3P49916 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
LIG3P49916 TSPY20P-201ENST00000450910 630 ntBASIC20.39■□□□□ 0.85
LIG3P49916 GATS-209ENST00000454084 1030 ntTSL 3 BASIC20.39■□□□□ 0.85
LIG3P49916 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC20.39■□□□□ 0.85
LIG3P49916 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
LIG3P49916 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC20.39■□□□□ 0.85
LIG3P49916 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC20.39■□□□□ 0.85
LIG3P49916 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
LIG3P49916 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC20.39■□□□□ 0.85
LIG3P49916 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
LIG3P49916 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC20.39■□□□□ 0.85
LIG3P49916 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
LIG3P49916 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC20.39■□□□□ 0.85
LIG3P49916 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC20.38■□□□□ 0.85
LIG3P49916 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
LIG3P49916 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
LIG3P49916 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
LIG3P49916 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC20.38■□□□□ 0.85
LIG3P49916 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
LIG3P49916 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
LIG3P49916 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC20.38■□□□□ 0.85
LIG3P49916 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC20.38■□□□□ 0.85
LIG3P49916 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC20.38■□□□□ 0.85
LIG3P49916 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
LIG3P49916 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
LIG3P49916 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC20.38■□□□□ 0.85
LIG3P49916 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC20.38■□□□□ 0.85
LIG3P49916 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
LIG3P49916 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC20.38■□□□□ 0.85
LIG3P49916 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC20.38■□□□□ 0.85
LIG3P49916 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
LIG3P49916 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC20.38■□□□□ 0.85
LIG3P49916 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
LIG3P49916 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
LIG3P49916 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
LIG3P49916 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
LIG3P49916 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
LIG3P49916 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
LIG3P49916 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC20.37■□□□□ 0.85
LIG3P49916 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
LIG3P49916 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
LIG3P49916 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms