Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PTPN9P43378 AC116562.4-201ENST00000641316 2276 ntBASIC20.3■□□□□ 0.84
PTPN9P43378 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
PTPN9P43378 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
PTPN9P43378 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
PTPN9P43378 ANKRD18DP-204ENST00000455355 1975 ntBASIC20.3■□□□□ 0.84
PTPN9P43378 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PTPN9P43378 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
PTPN9P43378 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC20.3■□□□□ 0.84
PTPN9P43378 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
PTPN9P43378 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
PTPN9P43378 KRT16P5-201ENST00000455284 522 ntBASIC20.3■□□□□ 0.84
PTPN9P43378 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
PTPN9P43378 C1QL1P1-201ENST00000568105 661 ntBASIC20.3■□□□□ 0.84
PTPN9P43378 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
PTPN9P43378 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
PTPN9P43378 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC20.3■□□□□ 0.84
PTPN9P43378 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC20.3■□□□□ 0.84
PTPN9P43378 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PTPN9P43378 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
PTPN9P43378 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC20.3■□□□□ 0.84
PTPN9P43378 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
PTPN9P43378 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
PTPN9P43378 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC20.3■□□□□ 0.84
PTPN9P43378 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
PTPN9P43378 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PTPN9P43378 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
PTPN9P43378 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC20.29■□□□□ 0.84
PTPN9P43378 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PTPN9P43378 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC20.29■□□□□ 0.84
PTPN9P43378 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PTPN9P43378 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
PTPN9P43378 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PTPN9P43378 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC20.29■□□□□ 0.84
PTPN9P43378 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PTPN9P43378 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC20.29■□□□□ 0.84
PTPN9P43378 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
PTPN9P43378 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
PTPN9P43378 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
PTPN9P43378 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC20.29■□□□□ 0.84
PTPN9P43378 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC20.29■□□□□ 0.84
PTPN9P43378 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC20.29■□□□□ 0.84
PTPN9P43378 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
PTPN9P43378 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PTPN9P43378 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
PTPN9P43378 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
PTPN9P43378 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
PTPN9P43378 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
PTPN9P43378 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
PTPN9P43378 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PTPN9P43378 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PTPN9P43378 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PTPN9P43378 KRT18P29-201ENST00000397031 1267 ntBASIC20.28■□□□□ 0.84
PTPN9P43378 C1QBPP2-201ENST00000528754 825 ntBASIC20.28■□□□□ 0.84
PTPN9P43378 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC20.28■□□□□ 0.84
PTPN9P43378 RNF121-214ENST00000533380 870 ntTSL 3 BASIC20.28■□□□□ 0.84
PTPN9P43378 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
PTPN9P43378 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC20.28■□□□□ 0.84
PTPN9P43378 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
PTPN9P43378 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
PTPN9P43378 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC20.28■□□□□ 0.84
PTPN9P43378 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
PTPN9P43378 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
PTPN9P43378 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
PTPN9P43378 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC20.28■□□□□ 0.84
PTPN9P43378 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PTPN9P43378 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
PTPN9P43378 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC20.28■□□□□ 0.84
PTPN9P43378 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PTPN9P43378 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PTPN9P43378 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PTPN9P43378 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC20.27■□□□□ 0.84
PTPN9P43378 AC005332.7-201ENST00000614046 2005 ntBASIC20.27■□□□□ 0.84
PTPN9P43378 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
PTPN9P43378 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
PTPN9P43378 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PTPN9P43378 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
PTPN9P43378 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
PTPN9P43378 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
PTPN9P43378 RPPH1-201ENST00000516869 333 ntBASIC20.27■□□□□ 0.84
PTPN9P43378 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC20.27■□□□□ 0.84
PTPN9P43378 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC20.27■□□□□ 0.84
PTPN9P43378 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
PTPN9P43378 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC20.27■□□□□ 0.84
PTPN9P43378 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PTPN9P43378 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PTPN9P43378 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
PTPN9P43378 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
PTPN9P43378 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
PTPN9P43378 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC20.27■□□□□ 0.83
PTPN9P43378 AC104417.2-201ENST00000562989 1793 ntBASIC20.26■□□□□ 0.83
PTPN9P43378 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC20.26■□□□□ 0.83
PTPN9P43378 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC20.26■□□□□ 0.83
PTPN9P43378 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC20.26■□□□□ 0.83
PTPN9P43378 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
PTPN9P43378 PRORSD1P-201ENST00000295112 541 ntBASIC20.26■□□□□ 0.83
PTPN9P43378 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC20.26■□□□□ 0.83
PTPN9P43378 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
PTPN9P43378 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC20.26■□□□□ 0.83
PTPN9P43378 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC20.26■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms