Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 GOLGA6L3-201ENST00000507199 1679 ntBASIC19.41■□□□□ 0.7
MSH3P20585 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
MSH3P20585 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
MSH3P20585 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC19.41■□□□□ 0.7
MSH3P20585 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC19.41■□□□□ 0.7
MSH3P20585 AL158047.1-201ENST00000445918 881 ntBASIC19.41■□□□□ 0.7
MSH3P20585 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC19.41■□□□□ 0.7
MSH3P20585 F2R-202ENST00000505600 442 ntTSL 2 BASIC19.41■□□□□ 0.7
MSH3P20585 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC19.41■□□□□ 0.7
MSH3P20585 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC19.41■□□□□ 0.7
MSH3P20585 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC19.41■□□□□ 0.7
MSH3P20585 AL359736.2-201ENST00000621992 437 ntBASIC19.41■□□□□ 0.7
MSH3P20585 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC19.41■□□□□ 0.7
MSH3P20585 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC19.41■□□□□ 0.7
MSH3P20585 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC19.41■□□□□ 0.7
MSH3P20585 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
MSH3P20585 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
MSH3P20585 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
MSH3P20585 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
MSH3P20585 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
MSH3P20585 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC19.41■□□□□ 0.7
MSH3P20585 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
MSH3P20585 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.7
MSH3P20585 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
MSH3P20585 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
MSH3P20585 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
MSH3P20585 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
MSH3P20585 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC19.4■□□□□ 0.7
MSH3P20585 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
MSH3P20585 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
MSH3P20585 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC19.4■□□□□ 0.7
MSH3P20585 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC19.4■□□□□ 0.7
MSH3P20585 AC098590.1-201ENST00000468126 897 ntBASIC19.4■□□□□ 0.7
MSH3P20585 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC19.4■□□□□ 0.7
MSH3P20585 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC19.4■□□□□ 0.7
MSH3P20585 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
MSH3P20585 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
MSH3P20585 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
MSH3P20585 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
MSH3P20585 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
MSH3P20585 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
MSH3P20585 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
MSH3P20585 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
MSH3P20585 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
MSH3P20585 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC19.4■□□□□ 0.7
MSH3P20585 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC19.39■□□□□ 0.7
MSH3P20585 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.7
MSH3P20585 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
MSH3P20585 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
MSH3P20585 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
MSH3P20585 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
MSH3P20585 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
MSH3P20585 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
MSH3P20585 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
MSH3P20585 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC19.39■□□□□ 0.69
MSH3P20585 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
MSH3P20585 GCSHP5-201ENST00000443090 522 ntBASIC19.39■□□□□ 0.69
MSH3P20585 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
MSH3P20585 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
MSH3P20585 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC19.39■□□□□ 0.69
MSH3P20585 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC19.39■□□□□ 0.69
MSH3P20585 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC19.39■□□□□ 0.69
MSH3P20585 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC19.39■□□□□ 0.69
MSH3P20585 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC19.39■□□□□ 0.69
MSH3P20585 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC19.39■□□□□ 0.69
MSH3P20585 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC19.39■□□□□ 0.69
MSH3P20585 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC19.39■□□□□ 0.69
MSH3P20585 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
MSH3P20585 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
MSH3P20585 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
MSH3P20585 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
MSH3P20585 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
MSH3P20585 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
MSH3P20585 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
MSH3P20585 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
MSH3P20585 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
MSH3P20585 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
MSH3P20585 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
MSH3P20585 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
MSH3P20585 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
MSH3P20585 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
MSH3P20585 TUBB8P6-201ENST00000436895 1288 ntBASIC19.38■□□□□ 0.69
MSH3P20585 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC19.38■□□□□ 0.69
MSH3P20585 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
MSH3P20585 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC19.38■□□□□ 0.69
MSH3P20585 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
MSH3P20585 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC19.38■□□□□ 0.69
MSH3P20585 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC19.38■□□□□ 0.69
MSH3P20585 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC19.38■□□□□ 0.69
MSH3P20585 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
MSH3P20585 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
MSH3P20585 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
MSH3P20585 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
MSH3P20585 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
MSH3P20585 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
MSH3P20585 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
MSH3P20585 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
MSH3P20585 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
MSH3P20585 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
MSH3P20585 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms