Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
NKX2-2O95096 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC18.03■□□□□ 0.48
NKX2-2O95096 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
NKX2-2O95096 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
NKX2-2O95096 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
NKX2-2O95096 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
NKX2-2O95096 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
NKX2-2O95096 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC18.02■□□□□ 0.48
NKX2-2O95096 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC18.02■□□□□ 0.48
NKX2-2O95096 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC18.02■□□□□ 0.48
NKX2-2O95096 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
NKX2-2O95096 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
NKX2-2O95096 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
NKX2-2O95096 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
NKX2-2O95096 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
NKX2-2O95096 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
NKX2-2O95096 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC18.02■□□□□ 0.48
NKX2-2O95096 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
NKX2-2O95096 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC18.02■□□□□ 0.48
NKX2-2O95096 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC18.02■□□□□ 0.48
NKX2-2O95096 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
NKX2-2O95096 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC18.02■□□□□ 0.48
NKX2-2O95096 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC18.02■□□□□ 0.48
NKX2-2O95096 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
NKX2-2O95096 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
NKX2-2O95096 AL023875.1-201ENST00000640777 796 ntBASIC18.02■□□□□ 0.48
NKX2-2O95096 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
NKX2-2O95096 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.47
NKX2-2O95096 ANKRD18DP-204ENST00000455355 1975 ntBASIC18.02■□□□□ 0.47
NKX2-2O95096 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC18.02■□□□□ 0.47
NKX2-2O95096 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.47
NKX2-2O95096 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC18.02■□□□□ 0.47
NKX2-2O95096 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
NKX2-2O95096 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
NKX2-2O95096 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC18.01■□□□□ 0.47
NKX2-2O95096 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
NKX2-2O95096 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
NKX2-2O95096 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
NKX2-2O95096 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
NKX2-2O95096 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
NKX2-2O95096 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
NKX2-2O95096 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
NKX2-2O95096 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC18.01■□□□□ 0.47
NKX2-2O95096 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC18.01■□□□□ 0.47
NKX2-2O95096 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
NKX2-2O95096 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
NKX2-2O95096 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
NKX2-2O95096 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
NKX2-2O95096 SERF2-207ENST00000409614 582 ntTSL 2 BASIC18.01■□□□□ 0.47
NKX2-2O95096 AC239809.2-201ENST00000415381 517 ntBASIC18.01■□□□□ 0.47
NKX2-2O95096 AC128676.1-201ENST00000454392 318 ntBASIC18.01■□□□□ 0.47
NKX2-2O95096 LY6E-205ENST00000519611 635 ntTSL 3 BASIC18.01■□□□□ 0.47
NKX2-2O95096 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC18.01■□□□□ 0.47
NKX2-2O95096 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC18.01■□□□□ 0.47
NKX2-2O95096 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC18.01■□□□□ 0.47
NKX2-2O95096 AC004264.1-201ENST00000608354 794 ntBASIC18.01■□□□□ 0.47
NKX2-2O95096 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
NKX2-2O95096 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
NKX2-2O95096 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
NKX2-2O95096 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC18.01■□□□□ 0.47
NKX2-2O95096 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC18.01■□□□□ 0.47
NKX2-2O95096 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
NKX2-2O95096 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC18.01■□□□□ 0.47
NKX2-2O95096 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
NKX2-2O95096 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC18.01■□□□□ 0.47
NKX2-2O95096 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
NKX2-2O95096 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
NKX2-2O95096 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
NKX2-2O95096 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC18■□□□□ 0.47
NKX2-2O95096 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
NKX2-2O95096 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC18■□□□□ 0.47
NKX2-2O95096 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC18■□□□□ 0.47
NKX2-2O95096 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
NKX2-2O95096 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
NKX2-2O95096 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
NKX2-2O95096 KRASP1-201ENST00000407852 552 ntBASIC18■□□□□ 0.47
NKX2-2O95096 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC18■□□□□ 0.47
NKX2-2O95096 AC133681.1-201ENST00000465482 601 ntBASIC18■□□□□ 0.47
NKX2-2O95096 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC18■□□□□ 0.47
NKX2-2O95096 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC18■□□□□ 0.47
NKX2-2O95096 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC18■□□□□ 0.47
NKX2-2O95096 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
NKX2-2O95096 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC18■□□□□ 0.47
NKX2-2O95096 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC18■□□□□ 0.47
NKX2-2O95096 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC18■□□□□ 0.47
NKX2-2O95096 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
NKX2-2O95096 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
NKX2-2O95096 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
NKX2-2O95096 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC17.99■□□□□ 0.47
NKX2-2O95096 AL032819.2-201ENST00000624543 2162 ntBASIC17.99■□□□□ 0.47
NKX2-2O95096 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
NKX2-2O95096 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
NKX2-2O95096 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC17.99■□□□□ 0.47
NKX2-2O95096 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
NKX2-2O95096 AC124016.1-201ENST00000609552 612 ntBASIC17.99■□□□□ 0.47
NKX2-2O95096 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
NKX2-2O95096 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC17.99■□□□□ 0.47
NKX2-2O95096 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
NKX2-2O95096 AC104417.2-201ENST00000562989 1793 ntBASIC17.99■□□□□ 0.47
NKX2-2O95096 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 78.4 ms