Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC19.09■□□□□ 0.65
VPS4BO75351 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
VPS4BO75351 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
VPS4BO75351 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
VPS4BO75351 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VPS4BO75351 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VPS4BO75351 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VPS4BO75351 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VPS4BO75351 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC19.09■□□□□ 0.65
VPS4BO75351 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VPS4BO75351 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC19.09■□□□□ 0.65
VPS4BO75351 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
VPS4BO75351 KRT18P68-201ENST00000392293 1000 ntBASIC19.09■□□□□ 0.65
VPS4BO75351 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VPS4BO75351 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC19.09■□□□□ 0.65
VPS4BO75351 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
VPS4BO75351 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
VPS4BO75351 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
VPS4BO75351 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC19.09■□□□□ 0.65
VPS4BO75351 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC19.09■□□□□ 0.65
VPS4BO75351 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC19.09■□□□□ 0.65
VPS4BO75351 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC19.09■□□□□ 0.65
VPS4BO75351 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VPS4BO75351 AC073912.3-201ENST00000624414 853 ntBASIC19.09■□□□□ 0.65
VPS4BO75351 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC19.09■□□□□ 0.65
VPS4BO75351 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
VPS4BO75351 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VPS4BO75351 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
VPS4BO75351 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
VPS4BO75351 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VPS4BO75351 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
VPS4BO75351 AC010980.2-201ENST00000587099 1412 ntBASIC19.08■□□□□ 0.65
VPS4BO75351 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.65
VPS4BO75351 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC19.08■□□□□ 0.65
VPS4BO75351 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC19.08■□□□□ 0.65
VPS4BO75351 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC19.08■□□□□ 0.65
VPS4BO75351 GCK-205ENST00000437084 1385 ntTSL 5 BASIC19.08■□□□□ 0.65
VPS4BO75351 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC19.08■□□□□ 0.65
VPS4BO75351 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
VPS4BO75351 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC19.08■□□□□ 0.65
VPS4BO75351 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
VPS4BO75351 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.65
VPS4BO75351 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
VPS4BO75351 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
VPS4BO75351 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC19.08■□□□□ 0.64
VPS4BO75351 ECEL1P3-201ENST00000427961 737 ntBASIC19.08■□□□□ 0.64
VPS4BO75351 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
VPS4BO75351 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC19.08■□□□□ 0.64
VPS4BO75351 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC19.08■□□□□ 0.64
VPS4BO75351 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
VPS4BO75351 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC19.08■□□□□ 0.64
VPS4BO75351 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
VPS4BO75351 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
VPS4BO75351 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC19.08■□□□□ 0.64
VPS4BO75351 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
VPS4BO75351 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
VPS4BO75351 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC19.08■□□□□ 0.64
VPS4BO75351 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC19.08■□□□□ 0.64
VPS4BO75351 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
VPS4BO75351 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VPS4BO75351 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VPS4BO75351 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
VPS4BO75351 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VPS4BO75351 LSM12P1-201ENST00000411836 588 ntBASIC19.07■□□□□ 0.64
VPS4BO75351 OR2A1-AS1-201ENST00000462305 773 ntBASIC19.07■□□□□ 0.64
VPS4BO75351 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC19.07■□□□□ 0.64
VPS4BO75351 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VPS4BO75351 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC19.07■□□□□ 0.64
VPS4BO75351 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC19.07■□□□□ 0.64
VPS4BO75351 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC19.07■□□□□ 0.64
VPS4BO75351 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VPS4BO75351 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VPS4BO75351 AL032819.2-201ENST00000624543 2162 ntBASIC19.07■□□□□ 0.64
VPS4BO75351 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
VPS4BO75351 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
VPS4BO75351 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VPS4BO75351 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
VPS4BO75351 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VPS4BO75351 PTGES2-AS1-201ENST00000443493 2100 ntBASIC19.07■□□□□ 0.64
VPS4BO75351 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
VPS4BO75351 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
VPS4BO75351 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
VPS4BO75351 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VPS4BO75351 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
VPS4BO75351 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VPS4BO75351 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC19.07■□□□□ 0.64
VPS4BO75351 PHGDH-210ENST00000641115 1638 ntBASIC19.07■□□□□ 0.64
VPS4BO75351 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
VPS4BO75351 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VPS4BO75351 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
VPS4BO75351 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
VPS4BO75351 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
VPS4BO75351 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
VPS4BO75351 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VPS4BO75351 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC19.06■□□□□ 0.64
VPS4BO75351 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC19.06■□□□□ 0.64
VPS4BO75351 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VPS4BO75351 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
VPS4BO75351 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VPS4BO75351 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC19.06■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms