Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
SDC3O75056 FAM207BP-201ENST00000447172 505 ntBASIC19.09■□□□□ 0.65
SDC3O75056 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC19.09■□□□□ 0.65
SDC3O75056 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC19.09■□□□□ 0.65
SDC3O75056 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC19.09■□□□□ 0.65
SDC3O75056 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
SDC3O75056 BX119927.1-201ENST00000636596 1552 ntBASIC19.09■□□□□ 0.65
SDC3O75056 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
SDC3O75056 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
SDC3O75056 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
SDC3O75056 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
SDC3O75056 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC19.08■□□□□ 0.65
SDC3O75056 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
SDC3O75056 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC19.08■□□□□ 0.65
SDC3O75056 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC19.08■□□□□ 0.65
SDC3O75056 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
SDC3O75056 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SDC3O75056 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
SDC3O75056 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
SDC3O75056 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SDC3O75056 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC19.08■□□□□ 0.64
SDC3O75056 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
SDC3O75056 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
SDC3O75056 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC19.08■□□□□ 0.64
SDC3O75056 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
SDC3O75056 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
SDC3O75056 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SDC3O75056 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
SDC3O75056 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SDC3O75056 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC19.08■□□□□ 0.64
SDC3O75056 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
SDC3O75056 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
SDC3O75056 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC19.07■□□□□ 0.64
SDC3O75056 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC19.07■□□□□ 0.64
SDC3O75056 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SDC3O75056 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
SDC3O75056 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SDC3O75056 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SDC3O75056 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC19.07■□□□□ 0.64
SDC3O75056 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SDC3O75056 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
SDC3O75056 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC19.07■□□□□ 0.64
SDC3O75056 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC19.07■□□□□ 0.64
SDC3O75056 PTPA-216ENST00000432651 857 ntTSL 2 BASIC19.07■□□□□ 0.64
SDC3O75056 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC19.07■□□□□ 0.64
SDC3O75056 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC19.07■□□□□ 0.64
SDC3O75056 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SDC3O75056 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SDC3O75056 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SDC3O75056 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SDC3O75056 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC19.07■□□□□ 0.64
SDC3O75056 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC19.06■□□□□ 0.64
SDC3O75056 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SDC3O75056 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SDC3O75056 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
SDC3O75056 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SDC3O75056 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC19.06■□□□□ 0.64
SDC3O75056 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SDC3O75056 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SDC3O75056 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
SDC3O75056 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
SDC3O75056 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC19.06■□□□□ 0.64
SDC3O75056 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
SDC3O75056 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC19.06■□□□□ 0.64
SDC3O75056 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC19.06■□□□□ 0.64
SDC3O75056 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC19.06■□□□□ 0.64
SDC3O75056 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC19.06■□□□□ 0.64
SDC3O75056 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC19.06■□□□□ 0.64
SDC3O75056 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SDC3O75056 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SDC3O75056 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SDC3O75056 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SDC3O75056 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
SDC3O75056 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SDC3O75056 LINC01465-201ENST00000408887 1940 ntBASIC19.06■□□□□ 0.64
SDC3O75056 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SDC3O75056 MOK-225ENST00000522867 1883 ntTSL 5 BASIC19.05■□□□□ 0.64
SDC3O75056 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SDC3O75056 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC19.05■□□□□ 0.64
SDC3O75056 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SDC3O75056 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SDC3O75056 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
SDC3O75056 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC19.05■□□□□ 0.64
SDC3O75056 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC19.05■□□□□ 0.64
SDC3O75056 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
SDC3O75056 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SDC3O75056 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SDC3O75056 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC19.05■□□□□ 0.64
SDC3O75056 AK4P3-201ENST00000418260 669 ntBASIC19.05■□□□□ 0.64
SDC3O75056 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC19.05■□□□□ 0.64
SDC3O75056 AC091390.4-202ENST00000476426 537 ntBASIC19.05■□□□□ 0.64
SDC3O75056 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC19.05■□□□□ 0.64
SDC3O75056 KRT8P8-201ENST00000434750 1448 ntBASIC19.05■□□□□ 0.64
SDC3O75056 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC19.05■□□□□ 0.64
SDC3O75056 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
SDC3O75056 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SDC3O75056 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SDC3O75056 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SDC3O75056 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC19.05■□□□□ 0.64
SDC3O75056 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms