Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC17.63■□□□□ 0.41
SSX4O60224 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC17.63■□□□□ 0.41
SSX4O60224 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC17.63■□□□□ 0.41
SSX4O60224 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC17.63■□□□□ 0.41
SSX4O60224 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SSX4O60224 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SSX4O60224 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SSX4O60224 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
SSX4O60224 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SSX4O60224 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SSX4O60224 NARF-205ENST00000412079 1760 ntTSL 5 BASIC17.63■□□□□ 0.41
SSX4O60224 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC17.63■□□□□ 0.41
SSX4O60224 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SSX4O60224 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SSX4O60224 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SSX4O60224 PWWP2AP1-201ENST00000429776 2273 ntBASIC17.63■□□□□ 0.41
SSX4O60224 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SSX4O60224 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
SSX4O60224 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SSX4O60224 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SSX4O60224 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SSX4O60224 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SSX4O60224 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SSX4O60224 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SSX4O60224 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SSX4O60224 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SSX4O60224 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC17.62■□□□□ 0.41
SSX4O60224 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SSX4O60224 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
SSX4O60224 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SSX4O60224 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
SSX4O60224 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SSX4O60224 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC17.62■□□□□ 0.41
SSX4O60224 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SSX4O60224 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC17.62■□□□□ 0.41
SSX4O60224 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
SSX4O60224 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SSX4O60224 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
SSX4O60224 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SSX4O60224 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SSX4O60224 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SSX4O60224 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SSX4O60224 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SSX4O60224 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SSX4O60224 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SSX4O60224 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC17.62■□□□□ 0.41
SSX4O60224 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC17.62■□□□□ 0.41
SSX4O60224 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SSX4O60224 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SSX4O60224 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SSX4O60224 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SSX4O60224 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SSX4O60224 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC17.61■□□□□ 0.41
SSX4O60224 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SSX4O60224 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
SSX4O60224 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SSX4O60224 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC17.61■□□□□ 0.41
SSX4O60224 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SSX4O60224 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SSX4O60224 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SSX4O60224 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC17.61■□□□□ 0.41
SSX4O60224 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SSX4O60224 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SSX4O60224 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
SSX4O60224 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
SSX4O60224 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SSX4O60224 GAS7-202ENST00000396115 929 ntTSL 5 BASIC17.61■□□□□ 0.41
SSX4O60224 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SSX4O60224 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
SSX4O60224 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC17.61■□□□□ 0.41
SSX4O60224 CD44-222ENST00000526025 1052 ntTSL 2 BASIC17.61■□□□□ 0.41
SSX4O60224 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC17.61■□□□□ 0.41
SSX4O60224 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SSX4O60224 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
SSX4O60224 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SSX4O60224 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
SSX4O60224 AC104581.1-202ENST00000635932 2618 ntBASIC17.61■□□□□ 0.41
SSX4O60224 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
SSX4O60224 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SSX4O60224 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC17.6■□□□□ 0.41
SSX4O60224 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SSX4O60224 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
SSX4O60224 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SSX4O60224 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SSX4O60224 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SSX4O60224 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC17.6■□□□□ 0.41
SSX4O60224 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SSX4O60224 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC17.6■□□□□ 0.41
SSX4O60224 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC17.6■□□□□ 0.41
SSX4O60224 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
SSX4O60224 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
SSX4O60224 AC245052.3-201ENST00000450182 901 ntBASIC17.6■□□□□ 0.41
SSX4O60224 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC17.6■□□□□ 0.41
SSX4O60224 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC17.6■□□□□ 0.41
SSX4O60224 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC17.6■□□□□ 0.41
SSX4O60224 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC17.6■□□□□ 0.41
SSX4O60224 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC17.6■□□□□ 0.41
SSX4O60224 AC006058.3-201ENST00000606217 1069 ntBASIC17.6■□□□□ 0.41
SSX4O60224 INO80E-214ENST00000620599 515 ntTSL 2 BASIC17.6■□□□□ 0.41
SSX4O60224 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms