Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
TMX2-CTNND1H3BSU7 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
TMX2-CTNND1H3BSU7 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
TMX2-CTNND1H3BSU7 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TMX2-CTNND1H3BSU7 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC19.16■□□□□ 0.66
TMX2-CTNND1H3BSU7 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
TMX2-CTNND1H3BSU7 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
TMX2-CTNND1H3BSU7 FAM197Y1-201ENST00000421178 764 ntBASIC19.16■□□□□ 0.66
TMX2-CTNND1H3BSU7 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC19.16■□□□□ 0.66
TMX2-CTNND1H3BSU7 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
TMX2-CTNND1H3BSU7 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TMX2-CTNND1H3BSU7 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
TMX2-CTNND1H3BSU7 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TMX2-CTNND1H3BSU7 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
TMX2-CTNND1H3BSU7 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
TMX2-CTNND1H3BSU7 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
TMX2-CTNND1H3BSU7 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC19.15■□□□□ 0.66
TMX2-CTNND1H3BSU7 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC19.15■□□□□ 0.66
TMX2-CTNND1H3BSU7 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TMX2-CTNND1H3BSU7 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
TMX2-CTNND1H3BSU7 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TMX2-CTNND1H3BSU7 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
TMX2-CTNND1H3BSU7 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TMX2-CTNND1H3BSU7 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC19.15■□□□□ 0.66
TMX2-CTNND1H3BSU7 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC19.15■□□□□ 0.66
TMX2-CTNND1H3BSU7 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TMX2-CTNND1H3BSU7 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
TMX2-CTNND1H3BSU7 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC19.15■□□□□ 0.66
TMX2-CTNND1H3BSU7 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TMX2-CTNND1H3BSU7 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
TMX2-CTNND1H3BSU7 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
TMX2-CTNND1H3BSU7 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
TMX2-CTNND1H3BSU7 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TMX2-CTNND1H3BSU7 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
TMX2-CTNND1H3BSU7 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
TMX2-CTNND1H3BSU7 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC19.14■□□□□ 0.66
TMX2-CTNND1H3BSU7 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.66
TMX2-CTNND1H3BSU7 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TMX2-CTNND1H3BSU7 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
TMX2-CTNND1H3BSU7 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC19.14■□□□□ 0.65
TMX2-CTNND1H3BSU7 AC018445.3-201ENST00000624177 1945 ntBASIC19.14■□□□□ 0.65
TMX2-CTNND1H3BSU7 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TMX2-CTNND1H3BSU7 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TMX2-CTNND1H3BSU7 UNC93B2-201ENST00000285383 730 ntBASIC19.14■□□□□ 0.65
TMX2-CTNND1H3BSU7 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
TMX2-CTNND1H3BSU7 NUDT16P1-203ENST00000513809 620 ntBASIC19.14■□□□□ 0.65
TMX2-CTNND1H3BSU7 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TMX2-CTNND1H3BSU7 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
TMX2-CTNND1H3BSU7 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC19.14■□□□□ 0.65
TMX2-CTNND1H3BSU7 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC19.14■□□□□ 0.65
TMX2-CTNND1H3BSU7 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC19.14■□□□□ 0.65
TMX2-CTNND1H3BSU7 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC19.14■□□□□ 0.65
TMX2-CTNND1H3BSU7 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TMX2-CTNND1H3BSU7 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
TMX2-CTNND1H3BSU7 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TMX2-CTNND1H3BSU7 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
TMX2-CTNND1H3BSU7 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.65
TMX2-CTNND1H3BSU7 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
TMX2-CTNND1H3BSU7 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
TMX2-CTNND1H3BSU7 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
TMX2-CTNND1H3BSU7 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC19.13■□□□□ 0.65
TMX2-CTNND1H3BSU7 SMG8-203ENST00000578922 2178 ntBASIC19.13■□□□□ 0.65
TMX2-CTNND1H3BSU7 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
TMX2-CTNND1H3BSU7 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
TMX2-CTNND1H3BSU7 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TMX2-CTNND1H3BSU7 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC19.13■□□□□ 0.65
TMX2-CTNND1H3BSU7 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TMX2-CTNND1H3BSU7 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TMX2-CTNND1H3BSU7 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TMX2-CTNND1H3BSU7 RCN1P1-201ENST00000400413 996 ntBASIC19.13■□□□□ 0.65
TMX2-CTNND1H3BSU7 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC19.13■□□□□ 0.65
TMX2-CTNND1H3BSU7 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TMX2-CTNND1H3BSU7 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
TMX2-CTNND1H3BSU7 FDX2-207ENST00000494368 584 ntTSL 4 BASIC19.13■□□□□ 0.65
TMX2-CTNND1H3BSU7 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC19.13■□□□□ 0.65
TMX2-CTNND1H3BSU7 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC19.13■□□□□ 0.65
TMX2-CTNND1H3BSU7 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TMX2-CTNND1H3BSU7 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC19.13■□□□□ 0.65
TMX2-CTNND1H3BSU7 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC19.13■□□□□ 0.65
TMX2-CTNND1H3BSU7 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
TMX2-CTNND1H3BSU7 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TMX2-CTNND1H3BSU7 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC19.13■□□□□ 0.65
TMX2-CTNND1H3BSU7 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
TMX2-CTNND1H3BSU7 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
TMX2-CTNND1H3BSU7 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC19.13■□□□□ 0.65
TMX2-CTNND1H3BSU7 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TMX2-CTNND1H3BSU7 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC19.12■□□□□ 0.65
TMX2-CTNND1H3BSU7 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TMX2-CTNND1H3BSU7 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC19.12■□□□□ 0.65
TMX2-CTNND1H3BSU7 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC19.12■□□□□ 0.65
TMX2-CTNND1H3BSU7 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
TMX2-CTNND1H3BSU7 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC19.12■□□□□ 0.65
TMX2-CTNND1H3BSU7 KRT8P20-201ENST00000423953 1409 ntBASIC19.12■□□□□ 0.65
TMX2-CTNND1H3BSU7 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC19.12■□□□□ 0.65
TMX2-CTNND1H3BSU7 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
TMX2-CTNND1H3BSU7 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC19.12■□□□□ 0.65
TMX2-CTNND1H3BSU7 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC19.12■□□□□ 0.65
TMX2-CTNND1H3BSU7 GLDC-219ENST00000640208 420 ntTSL 2 BASIC19.12■□□□□ 0.65
TMX2-CTNND1H3BSU7 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TMX2-CTNND1H3BSU7 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms