Protein–RNA interactions for Protein: A0A0B4J266

TRAV41, T-cell receptor alpha variable 41 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV41A0A0B4J266 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC15.38■□□□□ 0.05
TRAV41A0A0B4J266 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRAV41A0A0B4J266 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC15.38■□□□□ 0.05
TRAV41A0A0B4J266 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC15.38■□□□□ 0.05
TRAV41A0A0B4J266 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC15.38■□□□□ 0.05
TRAV41A0A0B4J266 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC15.38■□□□□ 0.05
TRAV41A0A0B4J266 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
TRAV41A0A0B4J266 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC15.38■□□□□ 0.05
TRAV41A0A0B4J266 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRAV41A0A0B4J266 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
TRAV41A0A0B4J266 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRAV41A0A0B4J266 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRAV41A0A0B4J266 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC15.38■□□□□ 0.05
TRAV41A0A0B4J266 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRAV41A0A0B4J266 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC15.38■□□□□ 0.05
TRAV41A0A0B4J266 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
TRAV41A0A0B4J266 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
TRAV41A0A0B4J266 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC15.37■□□□□ 0.05
TRAV41A0A0B4J266 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
TRAV41A0A0B4J266 MED17-221ENST00000639724 2317 ntTSL 5 BASIC15.37■□□□□ 0.05
TRAV41A0A0B4J266 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC15.37■□□□□ 0.05
TRAV41A0A0B4J266 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
TRAV41A0A0B4J266 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
TRAV41A0A0B4J266 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC15.37■□□□□ 0.05
TRAV41A0A0B4J266 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC15.37■□□□□ 0.05
TRAV41A0A0B4J266 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
TRAV41A0A0B4J266 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC15.37■□□□□ 0.05
TRAV41A0A0B4J266 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC15.37■□□□□ 0.05
TRAV41A0A0B4J266 RHOD-202ENST00000532559 538 ntTSL 3 BASIC15.37■□□□□ 0.05
TRAV41A0A0B4J266 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
TRAV41A0A0B4J266 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC15.37■□□□□ 0.05
TRAV41A0A0B4J266 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC15.37■□□□□ 0.05
TRAV41A0A0B4J266 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
TRAV41A0A0B4J266 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC15.37■□□□□ 0.05
TRAV41A0A0B4J266 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
TRAV41A0A0B4J266 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
TRAV41A0A0B4J266 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC15.37■□□□□ 0.05
TRAV41A0A0B4J266 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
TRAV41A0A0B4J266 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
TRAV41A0A0B4J266 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC15.37■□□□□ 0.05
TRAV41A0A0B4J266 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
TRAV41A0A0B4J266 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
TRAV41A0A0B4J266 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC15.37■□□□□ 0.05
TRAV41A0A0B4J266 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
TRAV41A0A0B4J266 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
TRAV41A0A0B4J266 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
TRAV41A0A0B4J266 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC15.36■□□□□ 0.05
TRAV41A0A0B4J266 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC15.36■□□□□ 0.05
TRAV41A0A0B4J266 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC15.36■□□□□ 0.05
TRAV41A0A0B4J266 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
TRAV41A0A0B4J266 AC138932.1-201ENST00000534164 6830 ntBASIC15.36■□□□□ 0.05
TRAV41A0A0B4J266 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
TRAV41A0A0B4J266 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRAV41A0A0B4J266 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
TRAV41A0A0B4J266 KRT8P8-201ENST00000434750 1448 ntBASIC15.36■□□□□ 0.05
TRAV41A0A0B4J266 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRAV41A0A0B4J266 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRAV41A0A0B4J266 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRAV41A0A0B4J266 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
TRAV41A0A0B4J266 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC15.36■□□□□ 0.05
TRAV41A0A0B4J266 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRAV41A0A0B4J266 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRAV41A0A0B4J266 BAALC-201ENST00000297574 801 ntTSL 3 BASIC15.36■□□□□ 0.05
TRAV41A0A0B4J266 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRAV41A0A0B4J266 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC15.36■□□□□ 0.05
TRAV41A0A0B4J266 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRAV41A0A0B4J266 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC15.36■□□□□ 0.05
TRAV41A0A0B4J266 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC15.36■□□□□ 0.05
TRAV41A0A0B4J266 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC15.36■□□□□ 0.05
TRAV41A0A0B4J266 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRAV41A0A0B4J266 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRAV41A0A0B4J266 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRAV41A0A0B4J266 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
TRAV41A0A0B4J266 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC15.36■□□□□ 0.05
TRAV41A0A0B4J266 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC15.36■□□□□ 0.05
TRAV41A0A0B4J266 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRAV41A0A0B4J266 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
TRAV41A0A0B4J266 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
TRAV41A0A0B4J266 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TRAV41A0A0B4J266 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC15.35■□□□□ 0.05
TRAV41A0A0B4J266 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC15.35■□□□□ 0.05
TRAV41A0A0B4J266 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
TRAV41A0A0B4J266 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRAV41A0A0B4J266 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRAV41A0A0B4J266 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC15.35■□□□□ 0.05
TRAV41A0A0B4J266 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRAV41A0A0B4J266 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
TRAV41A0A0B4J266 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC15.35■□□□□ 0.05
TRAV41A0A0B4J266 TK2-204ENST00000525974 1178 ntTSL 2 BASIC15.35■□□□□ 0.05
TRAV41A0A0B4J266 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC15.35■□□□□ 0.05
TRAV41A0A0B4J266 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC15.35■□□□□ 0.05
TRAV41A0A0B4J266 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC15.35■□□□□ 0.05
TRAV41A0A0B4J266 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC15.35■□□□□ 0.05
TRAV41A0A0B4J266 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC15.35■□□□□ 0.05
TRAV41A0A0B4J266 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC15.35■□□□□ 0.05
TRAV41A0A0B4J266 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC15.35■□□□□ 0.05
TRAV41A0A0B4J266 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC15.35■□□□□ 0.05
TRAV41A0A0B4J266 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TRAV41A0A0B4J266 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC15.35■□□□□ 0.05
TRAV41A0A0B4J266 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms