Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC25.03■■□□□ 1.6
PCDHB3Q9Y5E6 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC25.03■■□□□ 1.6
PCDHB3Q9Y5E6 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
PCDHB3Q9Y5E6 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
PCDHB3Q9Y5E6 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC25.02■■□□□ 1.6
PCDHB3Q9Y5E6 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC25.01■■□□□ 1.59
PCDHB3Q9Y5E6 AGPS-202ENST00000409888 815 ntTSL 4 BASIC25.01■■□□□ 1.59
PCDHB3Q9Y5E6 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC25.01■■□□□ 1.59
PCDHB3Q9Y5E6 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC25.01■■□□□ 1.59
PCDHB3Q9Y5E6 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
PCDHB3Q9Y5E6 LINC01971-201ENST00000617888 1048 ntBASIC25■■□□□ 1.59
PCDHB3Q9Y5E6 GDI1-215ENST00000630693 786 ntTSL 4 BASIC25■■□□□ 1.59
PCDHB3Q9Y5E6 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
PCDHB3Q9Y5E6 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC24.99■■□□□ 1.59
PCDHB3Q9Y5E6 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
PCDHB3Q9Y5E6 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
PCDHB3Q9Y5E6 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC24.99■■□□□ 1.59
PCDHB3Q9Y5E6 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC24.99■■□□□ 1.59
PCDHB3Q9Y5E6 MIR3648-2-201ENST00000581792 180 ntBASIC24.99■■□□□ 1.59
PCDHB3Q9Y5E6 MIR3648-1-201ENST00000615959 180 ntBASIC24.99■■□□□ 1.59
PCDHB3Q9Y5E6 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
PCDHB3Q9Y5E6 EI24-212ENST00000615917 1407 ntTSL 2 BASIC24.98■■□□□ 1.59
PCDHB3Q9Y5E6 AC016575.1-201ENST00000607026 382 ntBASIC24.98■■□□□ 1.59
PCDHB3Q9Y5E6 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
PCDHB3Q9Y5E6 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
PCDHB3Q9Y5E6 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC24.97■■□□□ 1.59
PCDHB3Q9Y5E6 CALM3-209ENST00000597743 577 ntTSL 4 BASIC24.97■■□□□ 1.59
PCDHB3Q9Y5E6 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC24.97■■□□□ 1.59
PCDHB3Q9Y5E6 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC24.97■■□□□ 1.59
PCDHB3Q9Y5E6 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC24.97■■□□□ 1.59
PCDHB3Q9Y5E6 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC24.97■■□□□ 1.59
PCDHB3Q9Y5E6 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
PCDHB3Q9Y5E6 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
PCDHB3Q9Y5E6 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC24.96■■□□□ 1.59
PCDHB3Q9Y5E6 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC24.96■■□□□ 1.59
PCDHB3Q9Y5E6 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC24.96■■□□□ 1.59
PCDHB3Q9Y5E6 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.59
PCDHB3Q9Y5E6 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC24.95■■□□□ 1.59
PCDHB3Q9Y5E6 DUX4L11-201ENST00000611504 1267 ntBASIC24.95■■□□□ 1.58
PCDHB3Q9Y5E6 DUX4L12-201ENST00000614593 1267 ntBASIC24.95■■□□□ 1.58
PCDHB3Q9Y5E6 DUX4L14-201ENST00000621227 1267 ntBASIC24.95■■□□□ 1.58
PCDHB3Q9Y5E6 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
PCDHB3Q9Y5E6 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
PCDHB3Q9Y5E6 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
PCDHB3Q9Y5E6 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
PCDHB3Q9Y5E6 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC24.93■■□□□ 1.58
PCDHB3Q9Y5E6 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
PCDHB3Q9Y5E6 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
PCDHB3Q9Y5E6 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
PCDHB3Q9Y5E6 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC24.91■■□□□ 1.58
PCDHB3Q9Y5E6 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC24.91■■□□□ 1.58
PCDHB3Q9Y5E6 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
PCDHB3Q9Y5E6 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
PCDHB3Q9Y5E6 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
PCDHB3Q9Y5E6 AC010864.1-201ENST00000609407 1511 ntBASIC24.9■■□□□ 1.58
PCDHB3Q9Y5E6 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
PCDHB3Q9Y5E6 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC24.89■■□□□ 1.58
PCDHB3Q9Y5E6 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
PCDHB3Q9Y5E6 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC24.89■■□□□ 1.58
PCDHB3Q9Y5E6 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
PCDHB3Q9Y5E6 AL139393.2-201ENST00000608721 2025 ntBASIC24.87■■□□□ 1.57
PCDHB3Q9Y5E6 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC24.87■■□□□ 1.57
PCDHB3Q9Y5E6 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC24.86■■□□□ 1.57
PCDHB3Q9Y5E6 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
PCDHB3Q9Y5E6 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC24.86■■□□□ 1.57
PCDHB3Q9Y5E6 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC24.86■■□□□ 1.57
PCDHB3Q9Y5E6 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC24.85■■□□□ 1.57
PCDHB3Q9Y5E6 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
PCDHB3Q9Y5E6 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
PCDHB3Q9Y5E6 CR559946.2-201ENST00000623684 991 ntBASIC24.84■■□□□ 1.57
PCDHB3Q9Y5E6 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
PCDHB3Q9Y5E6 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
PCDHB3Q9Y5E6 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
PCDHB3Q9Y5E6 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC24.83■■□□□ 1.56
PCDHB3Q9Y5E6 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
PCDHB3Q9Y5E6 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC24.82■■□□□ 1.56
PCDHB3Q9Y5E6 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC24.82■■□□□ 1.56
PCDHB3Q9Y5E6 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC24.81■■□□□ 1.56
PCDHB3Q9Y5E6 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
PCDHB3Q9Y5E6 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC24.8■■□□□ 1.56
PCDHB3Q9Y5E6 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
PCDHB3Q9Y5E6 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
PCDHB3Q9Y5E6 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC24.79■■□□□ 1.56
PCDHB3Q9Y5E6 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC24.79■■□□□ 1.56
PCDHB3Q9Y5E6 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC24.79■■□□□ 1.56
PCDHB3Q9Y5E6 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
PCDHB3Q9Y5E6 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
PCDHB3Q9Y5E6 DRD5P2-201ENST00000421395 2012 ntBASIC24.78■■□□□ 1.56
PCDHB3Q9Y5E6 DUX4L13-201ENST00000554103 1267 ntBASIC24.78■■□□□ 1.56
PCDHB3Q9Y5E6 DUX4L15-201ENST00000611059 1267 ntBASIC24.78■■□□□ 1.56
PCDHB3Q9Y5E6 DUX4L23-201ENST00000615195 1269 ntBASIC24.78■■□□□ 1.56
PCDHB3Q9Y5E6 DUX4L24-201ENST00000617576 1269 ntBASIC24.78■■□□□ 1.56
PCDHB3Q9Y5E6 DUX4L22-201ENST00000618238 1269 ntBASIC24.78■■□□□ 1.56
PCDHB3Q9Y5E6 DUX4L20-201ENST00000619712 1269 ntBASIC24.78■■□□□ 1.56
PCDHB3Q9Y5E6 DUX4L21-201ENST00000622058 1269 ntBASIC24.78■■□□□ 1.56
PCDHB3Q9Y5E6 DUX4L10-201ENST00000622460 1267 ntBASIC24.78■■□□□ 1.56
PCDHB3Q9Y5E6 DUX4L25-201ENST00000624915 1269 ntBASIC24.78■■□□□ 1.56
PCDHB3Q9Y5E6 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
PCDHB3Q9Y5E6 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
PCDHB3Q9Y5E6 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms