Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC28.29■■■□□ 2.12
LRCH3Q96II8 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
LRCH3Q96II8 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
LRCH3Q96II8 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
LRCH3Q96II8 THA1P-201ENST00000590384 1145 ntBASIC28.29■■■□□ 2.12
LRCH3Q96II8 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC28.29■■■□□ 2.12
LRCH3Q96II8 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC28.28■■■□□ 2.12
LRCH3Q96II8 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
LRCH3Q96II8 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
LRCH3Q96II8 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
LRCH3Q96II8 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
LRCH3Q96II8 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
LRCH3Q96II8 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC28.26■■■□□ 2.11
LRCH3Q96II8 DUX4L18-201ENST00000553347 1267 ntBASIC28.25■■■□□ 2.11
LRCH3Q96II8 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC28.25■■■□□ 2.11
LRCH3Q96II8 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC28.25■■■□□ 2.11
LRCH3Q96II8 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC28.24■■■□□ 2.11
LRCH3Q96II8 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
LRCH3Q96II8 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC28.23■■■□□ 2.11
LRCH3Q96II8 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
LRCH3Q96II8 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC28.22■■■□□ 2.11
LRCH3Q96II8 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
LRCH3Q96II8 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC28.21■■■□□ 2.11
LRCH3Q96II8 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
LRCH3Q96II8 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
LRCH3Q96II8 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
LRCH3Q96II8 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
LRCH3Q96II8 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
LRCH3Q96II8 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC28.18■■■□□ 2.1
LRCH3Q96II8 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC28.18■■■□□ 2.1
LRCH3Q96II8 LINC00273-201ENST00000539813 1452 ntBASIC28.18■■■□□ 2.1
LRCH3Q96II8 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
LRCH3Q96II8 AC129492.7-201ENST00000622992 756 ntBASIC28.16■■■□□ 2.1
LRCH3Q96II8 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC28.15■■■□□ 2.1
LRCH3Q96II8 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC28.15■■■□□ 2.1
LRCH3Q96II8 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
LRCH3Q96II8 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC28.15■■■□□ 2.1
LRCH3Q96II8 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
LRCH3Q96II8 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
LRCH3Q96II8 CHST11-203ENST00000547956 936 ntTSL 2 BASIC28.14■■■□□ 2.1
LRCH3Q96II8 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC28.14■■■□□ 2.09
LRCH3Q96II8 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC28.13■■■□□ 2.09
LRCH3Q96II8 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC28.13■■■□□ 2.09
LRCH3Q96II8 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC28.13■■■□□ 2.09
LRCH3Q96II8 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC28.12■■■□□ 2.09
LRCH3Q96II8 AC009299.2-201ENST00000482477 511 ntBASIC28.12■■■□□ 2.09
LRCH3Q96II8 AC092296.2-201ENST00000589470 999 ntBASIC28.12■■■□□ 2.09
LRCH3Q96II8 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
LRCH3Q96II8 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC28.1■■■□□ 2.09
LRCH3Q96II8 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC28.1■■■□□ 2.09
LRCH3Q96II8 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC28.1■■■□□ 2.09
LRCH3Q96II8 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC28.1■■■□□ 2.09
LRCH3Q96II8 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC28.1■■■□□ 2.09
LRCH3Q96II8 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
LRCH3Q96II8 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
LRCH3Q96II8 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
LRCH3Q96II8 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC28.09■■■□□ 2.09
LRCH3Q96II8 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC28.09■■■□□ 2.09
LRCH3Q96II8 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC28.08■■■□□ 2.09
LRCH3Q96II8 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC28.07■■■□□ 2.08
LRCH3Q96II8 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
LRCH3Q96II8 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
LRCH3Q96II8 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
LRCH3Q96II8 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC28.06■■■□□ 2.08
LRCH3Q96II8 HES6-204ENST00000409182 863 ntTSL 2 BASIC28.06■■■□□ 2.08
LRCH3Q96II8 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC28.06■■■□□ 2.08
LRCH3Q96II8 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC28.05■■■□□ 2.08
LRCH3Q96II8 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC28.05■■■□□ 2.08
LRCH3Q96II8 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC28.04■■■□□ 2.08
LRCH3Q96II8 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
LRCH3Q96II8 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
LRCH3Q96II8 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC28.03■■■□□ 2.08
LRCH3Q96II8 GUSBP5-201ENST00000418136 578 ntBASIC28.03■■■□□ 2.08
LRCH3Q96II8 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC28.03■■■□□ 2.08
LRCH3Q96II8 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
LRCH3Q96II8 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
LRCH3Q96II8 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC28.02■■■□□ 2.08
LRCH3Q96II8 AC025884.2-201ENST00000553429 711 ntBASIC28.02■■■□□ 2.08
LRCH3Q96II8 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC28.02■■■□□ 2.08
LRCH3Q96II8 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
LRCH3Q96II8 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC28.02■■■□□ 2.08
LRCH3Q96II8 KRT8P33-201ENST00000508125 1423 ntBASIC28.01■■■□□ 2.08
LRCH3Q96II8 ECEL1P2-201ENST00000461596 1295 ntBASIC28.01■■■□□ 2.07
LRCH3Q96II8 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC28.01■■■□□ 2.07
LRCH3Q96II8 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
LRCH3Q96II8 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC27.99■■■□□ 2.07
LRCH3Q96II8 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC27.99■■■□□ 2.07
LRCH3Q96II8 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC27.99■■■□□ 2.07
LRCH3Q96II8 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC27.99■■■□□ 2.07
LRCH3Q96II8 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC27.99■■■□□ 2.07
LRCH3Q96II8 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC27.99■■■□□ 2.07
LRCH3Q96II8 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC27.98■■■□□ 2.07
LRCH3Q96II8 AL592293.1-201ENST00000502889 1188 ntBASIC27.98■■■□□ 2.07
LRCH3Q96II8 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC27.98■■■□□ 2.07
LRCH3Q96II8 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC27.98■■■□□ 2.07
LRCH3Q96II8 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC27.98■■■□□ 2.07
LRCH3Q96II8 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC27.97■■■□□ 2.07
LRCH3Q96II8 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC27.96■■■□□ 2.07
LRCH3Q96II8 OR2A1-AS1-204ENST00000470435 602 ntBASIC27.96■■■□□ 2.07
LRCH3Q96II8 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC27.96■■■□□ 2.07
Retrieved 100 of 98,524 protein–RNA pairs in 56.9 ms