Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC30.5■■■□□ 2.47
CHMP4CQ96CF2 RNF166-209ENST00000567844 633 ntTSL 5 BASIC30.5■■■□□ 2.47
CHMP4CQ96CF2 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
CHMP4CQ96CF2 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC30.49■■■□□ 2.47
CHMP4CQ96CF2 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC30.49■■■□□ 2.47
CHMP4CQ96CF2 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC30.48■■■□□ 2.47
CHMP4CQ96CF2 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
CHMP4CQ96CF2 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC30.46■■■□□ 2.47
CHMP4CQ96CF2 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
CHMP4CQ96CF2 AC127502.1-201ENST00000399971 1502 ntBASIC30.46■■■□□ 2.47
CHMP4CQ96CF2 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
CHMP4CQ96CF2 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
CHMP4CQ96CF2 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
CHMP4CQ96CF2 DUX4L11-201ENST00000611504 1267 ntBASIC30.45■■■□□ 2.47
CHMP4CQ96CF2 DUX4L12-201ENST00000614593 1267 ntBASIC30.45■■■□□ 2.47
CHMP4CQ96CF2 DUX4L14-201ENST00000621227 1267 ntBASIC30.45■■■□□ 2.47
CHMP4CQ96CF2 AP004833.2-201ENST00000532228 1454 ntBASIC30.44■■■□□ 2.46
CHMP4CQ96CF2 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC30.43■■■□□ 2.46
CHMP4CQ96CF2 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC30.43■■■□□ 2.46
CHMP4CQ96CF2 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
CHMP4CQ96CF2 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
CHMP4CQ96CF2 AC016575.1-201ENST00000607026 382 ntBASIC30.42■■■□□ 2.46
CHMP4CQ96CF2 SHF-206ENST00000560471 2499 ntTSL 5 BASIC30.42■■■□□ 2.46
CHMP4CQ96CF2 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
CHMP4CQ96CF2 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC30.42■■■□□ 2.46
CHMP4CQ96CF2 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
CHMP4CQ96CF2 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC30.41■■■□□ 2.46
CHMP4CQ96CF2 LINC01971-201ENST00000617888 1048 ntBASIC30.4■■■□□ 2.46
CHMP4CQ96CF2 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
CHMP4CQ96CF2 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC30.39■■■□□ 2.46
CHMP4CQ96CF2 CALM3-209ENST00000597743 577 ntTSL 4 BASIC30.39■■■□□ 2.46
CHMP4CQ96CF2 GDI1-215ENST00000630693 786 ntTSL 4 BASIC30.39■■■□□ 2.46
CHMP4CQ96CF2 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC30.39■■■□□ 2.45
CHMP4CQ96CF2 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC30.38■■■□□ 2.45
CHMP4CQ96CF2 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
CHMP4CQ96CF2 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC30.38■■■□□ 2.45
CHMP4CQ96CF2 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC30.37■■■□□ 2.45
CHMP4CQ96CF2 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC30.37■■■□□ 2.45
CHMP4CQ96CF2 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
CHMP4CQ96CF2 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
CHMP4CQ96CF2 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
CHMP4CQ96CF2 MIR3648-2-201ENST00000581792 180 ntBASIC30.36■■■□□ 2.45
CHMP4CQ96CF2 MIR3648-1-201ENST00000615959 180 ntBASIC30.36■■■□□ 2.45
CHMP4CQ96CF2 CR559946.2-201ENST00000623684 991 ntBASIC30.36■■■□□ 2.45
CHMP4CQ96CF2 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
CHMP4CQ96CF2 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC30.35■■■□□ 2.45
CHMP4CQ96CF2 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC30.35■■■□□ 2.45
CHMP4CQ96CF2 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC30.35■■■□□ 2.45
CHMP4CQ96CF2 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC30.34■■■□□ 2.45
CHMP4CQ96CF2 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC30.34■■■□□ 2.45
CHMP4CQ96CF2 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC30.34■■■□□ 2.45
CHMP4CQ96CF2 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
CHMP4CQ96CF2 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC30.33■■■□□ 2.45
CHMP4CQ96CF2 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC30.33■■■□□ 2.45
CHMP4CQ96CF2 AC142086.6-201ENST00000621154 1765 ntBASIC30.33■■■□□ 2.45
CHMP4CQ96CF2 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC30.32■■■□□ 2.44
CHMP4CQ96CF2 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
CHMP4CQ96CF2 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC30.31■■■□□ 2.44
CHMP4CQ96CF2 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
CHMP4CQ96CF2 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC30.3■■■□□ 2.44
CHMP4CQ96CF2 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC30.3■■■□□ 2.44
CHMP4CQ96CF2 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
CHMP4CQ96CF2 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC30.29■■■□□ 2.44
CHMP4CQ96CF2 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
CHMP4CQ96CF2 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
CHMP4CQ96CF2 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
CHMP4CQ96CF2 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC30.28■■■□□ 2.44
CHMP4CQ96CF2 LINC00273-201ENST00000539813 1452 ntBASIC30.27■■■□□ 2.44
CHMP4CQ96CF2 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC30.27■■■□□ 2.44
CHMP4CQ96CF2 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC30.27■■■□□ 2.44
CHMP4CQ96CF2 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
CHMP4CQ96CF2 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC30.26■■■□□ 2.43
CHMP4CQ96CF2 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC30.26■■■□□ 2.43
CHMP4CQ96CF2 MACF1-219ENST00000484793 834 ntTSL 2 BASIC30.25■■■□□ 2.43
CHMP4CQ96CF2 CHML-204ENST00000638121 920 ntTSL 2 BASIC30.25■■■□□ 2.43
CHMP4CQ96CF2 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC30.25■■■□□ 2.43
CHMP4CQ96CF2 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC30.25■■■□□ 2.43
CHMP4CQ96CF2 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC30.24■■■□□ 2.43
CHMP4CQ96CF2 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC30.24■■■□□ 2.43
CHMP4CQ96CF2 WHAMMP2-203ENST00000563942 1603 ntBASIC30.24■■■□□ 2.43
CHMP4CQ96CF2 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
CHMP4CQ96CF2 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC30.23■■■□□ 2.43
CHMP4CQ96CF2 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC30.23■■■□□ 2.43
CHMP4CQ96CF2 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC30.23■■■□□ 2.43
CHMP4CQ96CF2 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC30.23■■■□□ 2.43
CHMP4CQ96CF2 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC30.22■■■□□ 2.43
CHMP4CQ96CF2 DUX4L13-201ENST00000554103 1267 ntBASIC30.22■■■□□ 2.43
CHMP4CQ96CF2 DUX4L15-201ENST00000611059 1267 ntBASIC30.22■■■□□ 2.43
CHMP4CQ96CF2 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC30.22■■■□□ 2.43
CHMP4CQ96CF2 DUX4L23-201ENST00000615195 1269 ntBASIC30.22■■■□□ 2.43
CHMP4CQ96CF2 DUX4L24-201ENST00000617576 1269 ntBASIC30.22■■■□□ 2.43
CHMP4CQ96CF2 DUX4L22-201ENST00000618238 1269 ntBASIC30.22■■■□□ 2.43
CHMP4CQ96CF2 DUX4L20-201ENST00000619712 1269 ntBASIC30.22■■■□□ 2.43
CHMP4CQ96CF2 DUX4L21-201ENST00000622058 1269 ntBASIC30.22■■■□□ 2.43
CHMP4CQ96CF2 DUX4L10-201ENST00000622460 1267 ntBASIC30.22■■■□□ 2.43
CHMP4CQ96CF2 DUX4L25-201ENST00000624915 1269 ntBASIC30.22■■■□□ 2.43
CHMP4CQ96CF2 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
CHMP4CQ96CF2 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC30.22■■■□□ 2.43
CHMP4CQ96CF2 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC30.21■■■□□ 2.43
CHMP4CQ96CF2 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
Retrieved 100 of 98,524 protein–RNA pairs in 122.6 ms