Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC099314.1-201ENST00000563916 562 ntTSL 4 BASIC6.75□□□□□ -1.33
MSX1P28360 AC093519.1-201ENST00000566109 298 ntBASIC6.75□□□□□ -1.33
MSX1P28360 ARGFXP2-201ENST00000579304 949 ntBASIC6.75□□□□□ -1.33
MSX1P28360 MIR1273F-201ENST00000580581 99 ntBASIC6.75□□□□□ -1.33
MSX1P28360 SS18L2P2-201ENST00000583960 235 ntBASIC6.75□□□□□ -1.33
MSX1P28360 AC104785.1-201ENST00000603220 588 ntBASIC6.75□□□□□ -1.33
MSX1P28360 AC024085.1-201ENST00000604299 432 ntBASIC6.75□□□□□ -1.33
MSX1P28360 AC008966.2-201ENST00000606157 453 ntBASIC6.75□□□□□ -1.33
MSX1P28360 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC6.75□□□□□ -1.33
MSX1P28360 MIR8082-201ENST00000612488 81 ntBASIC6.75□□□□□ -1.33
MSX1P28360 LINC01742-201ENST00000616333 628 ntTSL 3 BASIC6.75□□□□□ -1.33
MSX1P28360 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC6.75□□□□□ -1.33
MSX1P28360 AC026634.1-201ENST00000634369 198 ntBASIC6.75□□□□□ -1.33
MSX1P28360 AC243725.1-201ENST00000637164 436 ntBASIC6.75□□□□□ -1.33
MSX1P28360 OR2T35-202ENST00000641268 2957 ntAPPRIS P1 BASIC6.75□□□□□ -1.33
MSX1P28360 MAPK10-377ENST00000642006 2752 ntBASIC6.75□□□□□ -1.33
MSX1P28360 OAS2-202ENST00000392583 4734 ntAPPRIS ALT2 TSL 1 (best) BASIC6.75□□□□□ -1.33
MSX1P28360 GCNT3-209ENST00000560585 2360 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
MSX1P28360 AC069222.1-201ENST00000608028 3360 ntBASIC6.75□□□□□ -1.33
MSX1P28360 LIN7C-202ENST00000524596 4290 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
MSX1P28360 P3H2-203ENST00000427335 2963 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
MSX1P28360 AC046144.1-201ENST00000478559 1853 ntBASIC6.75□□□□□ -1.33
MSX1P28360 ZBTB18-201ENST00000358704 3851 ntAPPRIS P2 TSL 1 (best) BASIC6.75□□□□□ -1.33
MSX1P28360 FAM197Y2-202ENST00000448006 2338 ntTSL 2 BASIC6.75□□□□□ -1.33
MSX1P28360 TCAM1P-205ENST00000478379 3317 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
MSX1P28360 PGAP1-201ENST00000354764 11114 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
MSX1P28360 MEPE-204ENST00000497649 2226 ntAPPRIS ALT2 TSL 5 BASIC6.74□□□□□ -1.33
MSX1P28360 AC021078.1-201ENST00000499521 8636 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
MSX1P28360 CPS1-201ENST00000233072 5821 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
MSX1P28360 CAST-202ENST00000325674 3356 ntTSL 5 BASIC6.74□□□□□ -1.33
MSX1P28360 NT5C2-203ENST00000404739 3365 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
MSX1P28360 AL096816.1-201ENST00000623300 2920 ntBASIC6.74□□□□□ -1.33
MSX1P28360 CDH18-201ENST00000274170 2809 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
MSX1P28360 MAPK10-244ENST00000639972 2818 ntTSL 5 BASIC6.74□□□□□ -1.33
MSX1P28360 SYT1-212ENST00000552744 2718 ntAPPRIS P3 TSL 1 (best) BASIC6.74□□□□□ -1.33
MSX1P28360 PTK2-207ENST00000517887 4661 ntTSL 5 BASIC6.74□□□□□ -1.33
MSX1P28360 ITGA2-201ENST00000296585 7869 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
MSX1P28360 AKAP5-201ENST00000320636 2601 ntAPPRIS P1 BASIC6.74□□□□□ -1.33
MSX1P28360 MTMR8-201ENST00000374852 2639 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
MSX1P28360 TRRAP-202ENST00000359863 12677 ntAPPRIS ALT2 TSL 1 (best) BASIC6.74□□□□□ -1.33
MSX1P28360 EEF1A1P5-201ENST00000436459 1389 ntBASIC6.74□□□□□ -1.33
MSX1P28360 BBOX1-204ENST00000528583 1724 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
MSX1P28360 TBX5-202ENST00000349716 3585 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
MSX1P28360 HLF-210ENST00000575345 3589 ntTSL 2 BASIC6.74□□□□□ -1.33
MSX1P28360 PBLD-203ENST00000336578 2449 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
MSX1P28360 FOCAD-201ENST00000338382 5765 ntAPPRIS P1 TSL 5 BASIC6.74□□□□□ -1.33
MSX1P28360 FMN1-211ENST00000561249 4251 ntAPPRIS ALT2 TSL 5 BASIC6.74□□□□□ -1.33
MSX1P28360 SLFN12L-201ENST00000260908 3119 ntAPPRIS P2 TSL 5 BASIC6.74□□□□□ -1.33
MSX1P28360 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
MSX1P28360 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC6.74□□□□□ -1.33
MSX1P28360 AC068050.1-201ENST00000394891 380 ntBASIC6.74□□□□□ -1.33
MSX1P28360 RPL32P23-201ENST00000397237 405 ntBASIC6.74□□□□□ -1.33
MSX1P28360 SOD1P1-201ENST00000407803 440 ntBASIC6.74□□□□□ -1.33
MSX1P28360 RN7SKP266-201ENST00000410232 287 ntBASIC6.74□□□□□ -1.33
MSX1P28360 AL591368.1-202ENST00000413050 548 ntTSL 3 BASIC6.74□□□□□ -1.33
MSX1P28360 AL691515.2-201ENST00000414765 466 ntTSL 3 BASIC6.74□□□□□ -1.33
MSX1P28360 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC6.74□□□□□ -1.33
MSX1P28360 AC009161.1-201ENST00000417306 376 ntBASIC6.74□□□□□ -1.33
MSX1P28360 RBM6-203ENST00000421682 684 ntTSL 2 BASIC6.74□□□□□ -1.33
MSX1P28360 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC6.74□□□□□ -1.33
MSX1P28360 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC6.74□□□□□ -1.33
MSX1P28360 Z98949.3-201ENST00000436423 472 ntTSL 5 BASIC6.74□□□□□ -1.33
MSX1P28360 CACYBPP1-201ENST00000438592 684 ntBASIC6.74□□□□□ -1.33
MSX1P28360 AL451164.3-201ENST00000441377 447 ntTSL 5 BASIC6.74□□□□□ -1.33
MSX1P28360 CXCR2P1-202ENST00000443392 1074 ntBASIC6.74□□□□□ -1.33
MSX1P28360 CLDN34-201ENST00000445307 995 ntAPPRIS P1 BASIC6.74□□□□□ -1.33
MSX1P28360 TRGVB-201ENST00000453257 471 ntBASIC6.74□□□□□ -1.33
MSX1P28360 AC068631.1-205ENST00000455926 409 ntTSL 3 BASIC6.74□□□□□ -1.33
MSX1P28360 RN7SL870P-201ENST00000460111 296 ntBASIC6.74□□□□□ -1.33
MSX1P28360 C2orf74-204ENST00000464909 726 ntAPPRIS P2 TSL 2 BASIC6.74□□□□□ -1.33
MSX1P28360 MRPS17P3-201ENST00000465453 385 ntBASIC6.74□□□□□ -1.33
MSX1P28360 AC040975.1-201ENST00000472104 316 ntBASIC6.74□□□□□ -1.33
MSX1P28360 AC027575.1-201ENST00000481064 460 ntBASIC6.74□□□□□ -1.33
MSX1P28360 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC6.74□□□□□ -1.33
MSX1P28360 AC006499.2-201ENST00000513470 337 ntBASIC6.74□□□□□ -1.33
MSX1P28360 RNU6-1003P-201ENST00000517099 105 ntBASIC6.74□□□□□ -1.33
MSX1P28360 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC6.74□□□□□ -1.33
MSX1P28360 AP003181.2-201ENST00000528941 181 ntBASIC6.74□□□□□ -1.33
MSX1P28360 TPPP2-208ENST00000530140 703 ntAPPRIS P1 TSL 2 BASIC6.74□□□□□ -1.33
MSX1P28360 AC018630.1-201ENST00000541376 925 ntBASIC6.74□□□□□ -1.33
MSX1P28360 UBE2CP4-201ENST00000561405 535 ntBASIC6.74□□□□□ -1.33
MSX1P28360 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC6.74□□□□□ -1.33
MSX1P28360 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC6.74□□□□□ -1.33
MSX1P28360 RN7SL131P-201ENST00000579043 256 ntBASIC6.74□□□□□ -1.33
MSX1P28360 RN7SL178P-201ENST00000582930 304 ntBASIC6.74□□□□□ -1.33
MSX1P28360 LAMTOR5-AS1-207ENST00000590826 574 ntTSL 4 BASIC6.74□□□□□ -1.33
MSX1P28360 AC108451.2-201ENST00000603875 538 ntBASIC6.74□□□□□ -1.33
MSX1P28360 CR382285.1-202ENST00000604687 547 ntBASIC6.74□□□□□ -1.33
MSX1P28360 SRP54-214ENST00000630962 162 ntTSL 5 BASIC6.74□□□□□ -1.33
MSX1P28360 AC074387.1-201ENST00000632044 823 ntTSL 2 BASIC6.74□□□□□ -1.33
MSX1P28360 AC099654.6-201ENST00000636487 512 ntBASIC6.74□□□□□ -1.33
MSX1P28360 AC012668.3-202ENST00000417485 1642 ntTSL 5 BASIC6.74□□□□□ -1.33
MSX1P28360 SOX6-201ENST00000316399 8808 ntAPPRIS P3 TSL 5 BASIC6.74□□□□□ -1.33
MSX1P28360 LINC02466-201ENST00000500092 1963 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
MSX1P28360 AMOT-203ENST00000371959 7319 ntAPPRIS ALT2 TSL 1 (best) BASIC6.74□□□□□ -1.33
MSX1P28360 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC6.74□□□□□ -1.33
MSX1P28360 BRS3-201ENST00000370648 2833 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
MSX1P28360 ZNF544-206ENST00000596652 2818 ntAPPRIS P3 TSL 1 (best) BASIC6.74□□□□□ -1.33
MSX1P28360 ZNF544-217ENST00000600220 2837 ntAPPRIS ALT2 TSL 3 BASIC6.74□□□□□ -1.33
MSX1P28360 DTNA-221ENST00000591182 1787 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 77.6 ms