RNA–Protein interactions for RNA: ENST00000552744.5

SYT1-212, Transcript of synaptotagmin 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYT1, Length 2,718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYT1-212ENST00000552744 CHIC1Q5VXU3 224 aa15.44■□□□□ 0.06
SYT1-212ENST00000552744 AEBP2Q6ZN18 517 aaPredicted RBP15.3■□□□□ 0.04
SYT1-212ENST00000552744 NISCHQ9Y2I1 1504 aa15.15■□□□□ 0.02
SYT1-212ENST00000552744 PHF23Q9BUL5 403 aaPredicted RBP13.86□□□□□ -0.19
SYT1-212ENST00000552744 SHROOM4Q9ULL8 1493 aa13.52□□□□□ -0.25
SYT1-212ENST00000552744 CCDC180Q9P1Z9 1646 aa13.43□□□□□ -0.26
SYT1-212ENST00000552744 SUPT5HO00267 1087 aaKnown RBP13.4□□□□□ -0.26
SYT1-212ENST00000552744 HRCP23327 699 aa13.02□□□□□ -0.32
SYT1-212ENST00000552744 DCAF8L2P0C7V8 631 aa13.01□□□□□ -0.33
SYT1-212ENST00000552744 PCGF6Q9BYE7 350 aa13□□□□□ -0.33
SYT1-212ENST00000552744 MYO15BQ96JP2 1530 aa12.96□□□□□ -0.33
SYT1-212ENST00000552744 PPARGC1BQ86YN6 1023 aaKnown RBP12.9□□□□□ -0.34
SYT1-212ENST00000552744 ABCC9O60706 1549 aa12.83□□□□□ -0.36
SYT1-212ENST00000552744 ZCCHC6Q5VYS8 1495 aaKnown RBP12.83□□□□□ -0.36
SYT1-212ENST00000552744 PLPPR3Q6T4P5 718 aa12.8□□□□□ -0.36
SYT1-212ENST00000552744 LOC105371045A0A1W2PR82 267 aa12.75□□□□□ -0.37
SYT1-212ENST00000552744 RB1CC1Q8TDY2 1594 aa12.6□□□□□ -0.39
SYT1-212ENST00000552744 SENP3Q9H4L4 574 aaPredicted RBP12.56□□□□□ -0.4
SYT1-212ENST00000552744 NACADO15069 1562 aa12.55□□□□□ -0.4
SYT1-212ENST00000552744 DCAF1Q9Y4B6 1507 aa12.53□□□□□ -0.4
SYT1-212ENST00000552744 TRIM26Q12899 539 aaPredicted RBP12.53□□□□□ -0.4
SYT1-212ENST00000552744 EHMT2Q96KQ7 1210 aa12.48□□□□□ -0.41
SYT1-212ENST00000552744 FAM9AQ8IZU1 332 aaPredicted RBP12.44□□□□□ -0.42
SYT1-212ENST00000552744 TRIM41Q8WV44 630 aa12.35□□□□□ -0.43
SYT1-212ENST00000552744 UNC13AQ9UPW8 1703 aa12.32□□□□□ -0.44
SYT1-212ENST00000552744 ADRA2BP18089 450 aa12.31□□□□□ -0.44
SYT1-212ENST00000552744 ZEB1P37275 1124 aaPredicted RBP12.3□□□□□ -0.44
SYT1-212ENST00000552744 SCAF1Q9H7N4 1312 aaKnown RBP12.24□□□□□ -0.45
SYT1-212ENST00000552744 KCNA4P22459 653 aa12.21□□□□□ -0.45
SYT1-212ENST00000552744 RSF1Q96T23 1441 aaPredicted RBP12.17□□□□□ -0.46
SYT1-212ENST00000552744 PELP1Q8IZL8 1130 aaKnown RBP12.14□□□□□ -0.47
SYT1-212ENST00000552744 SCRIBQ14160 1630 aa12.13□□□□□ -0.47
SYT1-212ENST00000552744 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.13□□□□□ -0.47
SYT1-212ENST00000552744 BICRAQ9NZM4 1560 aa12.12□□□□□ -0.47
SYT1-212ENST00000552744 TTBK1Q5TCY1 1321 aaPredicted RBP12.11□□□□□ -0.47
SYT1-212ENST00000552744 CCER1Q8TC90 406 aaPredicted RBP12.09□□□□□ -0.47
SYT1-212ENST00000552744 PPP6R1Q9UPN7 881 aa12.06□□□□□ -0.48
SYT1-212ENST00000552744 NEUROD1Q13562 356 aa12.01□□□□□ -0.49
SYT1-212ENST00000552744 ACIN1Q9UKV3 1341 aaKnown RBP11.99□□□□□ -0.49
SYT1-212ENST00000552744 DIEXFQ68CQ4 756 aaKnown RBP11.95□□□□□ -0.5
SYT1-212ENST00000552744 GTF3C3Q9Y5Q9 886 aa11.95□□□□□ -0.5
SYT1-212ENST00000552744 CECR2Q9BXF3 1484 aa11.94□□□□□ -0.5
SYT1-212ENST00000552744 CENPBP07199 599 aaPredicted RBP11.89□□□□□ -0.51
SYT1-212ENST00000552744 MROH2BQ7Z745 1585 aa11.88□□□□□ -0.51
SYT1-212ENST00000552744 DNAJC5BQ9UF47 199 aa11.87□□□□□ -0.51
SYT1-212ENST00000552744 YTHDC1Q96MU7 727 aaKnown RBP11.86□□□□□ -0.51
SYT1-212ENST00000552744 WIZO95785 1651 aa11.84□□□□□ -0.51
SYT1-212ENST00000552744 CC2D2AQ9P2K1 1620 aa11.81□□□□□ -0.52
SYT1-212ENST00000552744 EIF4G1Q04637 1599 aaKnown RBP11.81□□□□□ -0.52
SYT1-212ENST00000552744 CSRNP3Q8WYN3 585 aa11.79□□□□□ -0.52
SYT1-212ENST00000552744 UBTFP17480 764 aaKnown RBP11.79□□□□□ -0.52
SYT1-212ENST00000552744 FOXD1Q16676 465 aa11.77□□□□□ -0.52
SYT1-212ENST00000552744 ABCC8Q09428 1581 aa11.74□□□□□ -0.53
SYT1-212ENST00000552744 ZNF316A6NFI3 1004 aaPredicted RBP11.73□□□□□ -0.53
SYT1-212ENST00000552744 CEP162Q5TB80 1403 aa11.73□□□□□ -0.53
SYT1-212ENST00000552744 HNRNPUL2Q1KMD3 747 aaKnown RBP11.73□□□□□ -0.53
SYT1-212ENST00000552744 CCDC88BA6NC98 1476 aa11.72□□□□□ -0.53
SYT1-212ENST00000552744 PABPN1Q86U42 306 aaKnown RBP eCLIP11.71□□□□□ -0.53
SYT1-212ENST00000552744 SOGA1O94964 1423 aa11.7□□□□□ -0.54
SYT1-212ENST00000552744 RANGAP1P46060 587 aaPredicted RBP11.68□□□□□ -0.54
SYT1-212ENST00000552744 MIER1Q8N108 512 aa11.68□□□□□ -0.54
SYT1-212ENST00000552744 BAZ1AQ9NRL2 1556 aaPredicted RBP11.65□□□□□ -0.54
SYT1-212ENST00000552744 WRNQ14191 1432 aaPredicted RBP eCLIP11.64□□□□□ -0.55
SYT1-212ENST00000552744 RUSC2Q8N2Y8 1516 aa11.64□□□□□ -0.55
SYT1-212ENST00000552744 TNIKQ9UKE5 1360 aa11.62□□□□□ -0.55
SYT1-212ENST00000552744 SLC4A1APQ9BWU0 796 aaKnown RBP11.61□□□□□ -0.55
SYT1-212ENST00000552744 MYT1Q01538 1121 aa11.56□□□□□ -0.56
SYT1-212ENST00000552744 APLP2Q06481 763 aa11.56□□□□□ -0.56
SYT1-212ENST00000552744 TOP2AP11388 1531 aaKnown RBP11.53□□□□□ -0.56
SYT1-212ENST00000552744 SMARCA2P51531 1590 aa11.52□□□□□ -0.57
SYT1-212ENST00000552744 HMGXB3Q12766 1538 aa11.51□□□□□ -0.57
SYT1-212ENST00000552744 GOLGA3Q08378 1498 aa11.51□□□□□ -0.57
SYT1-212ENST00000552744 EEA1Q15075 1411 aa11.48□□□□□ -0.57
SYT1-212ENST00000552744 SMARCA4P51532 1647 aa11.48□□□□□ -0.57
SYT1-212ENST00000552744 PEG3Q9GZU2 1588 aa11.47□□□□□ -0.57
SYT1-212ENST00000552744 PPP4R3CPQ6ZMV5 832 aa11.46□□□□□ -0.57
SYT1-212ENST00000552744 CLIP1P30622 1438 aa11.46□□□□□ -0.57
SYT1-212ENST00000552744 CUX2O14529 1486 aa11.46□□□□□ -0.58
SYT1-212ENST00000552744 NCAPD3P42695 1498 aa11.46□□□□□ -0.58
SYT1-212ENST00000552744 CEP164Q9UPV0 1460 aa11.4□□□□□ -0.58
SYT1-212ENST00000552744 VPS8Q8N3P4 1428 aa11.39□□□□□ -0.59
SYT1-212ENST00000552744 ITGAEP38570 1179 aa11.38□□□□□ -0.59
SYT1-212ENST00000552744 SUPT16HQ9Y5B9 1047 aaKnown RBP11.37□□□□□ -0.59
SYT1-212ENST00000552744 RAPGEF2Q9Y4G8 1499 aa11.36□□□□□ -0.59
SYT1-212ENST00000552744 SYNJ1O43426 1573 aa11.34□□□□□ -0.59
SYT1-212ENST00000552744 ZBTB22O15209 634 aa11.34□□□□□ -0.59
SYT1-212ENST00000552744 ATAD2BQ9ULI0 1458 aa11.33□□□□□ -0.6
SYT1-212ENST00000552744 KANK4Q5T7N3 995 aaPredicted RBP11.33□□□□□ -0.6
SYT1-212ENST00000552744 DHX57Q6P158 1386 aaKnown RBP11.32□□□□□ -0.6
SYT1-212ENST00000552744 LAMC3Q9Y6N6 1575 aa11.31□□□□□ -0.6
SYT1-212ENST00000552744 BCANQ96GW7 911 aa11.31□□□□□ -0.6
SYT1-212ENST00000552744 KCNH8Q96L42 1107 aa11.3□□□□□ -0.6
SYT1-212ENST00000552744 KIF21BO75037 1637 aa11.3□□□□□ -0.6
SYT1-212ENST00000552744 NPM3O75607 178 aaKnown RBP11.28□□□□□ -0.6
SYT1-212ENST00000552744 TSHZ2Q9NRE2 1034 aa11.25□□□□□ -0.61
SYT1-212ENST00000552744 PIAS4Q8N2W9 510 aaPredicted RBP11.25□□□□□ -0.61
SYT1-212ENST00000552744 THOC2Q8NI27 1593 aaKnown RBP11.24□□□□□ -0.61
SYT1-212ENST00000552744 CLSPNQ9HAW4 1339 aa11.24□□□□□ -0.61
SYT1-212ENST00000552744 BAZ1BQ9UIG0 1483 aaKnown RBP11.24□□□□□ -0.61
SYT1-212ENST00000552744 DDX10Q13206 875 aaKnown RBP11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms