RNA–Protein interactions for RNA: ENST00000233072.9

CPS1-201, Transcript of carbamoyl-phosphate synthase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPS1, Length 5,821 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPS1-201ENST00000233072 DCAF8L2P0C7V8 631 aa12.14□□□□□ -0.47
CPS1-201ENST00000233072 NISCHQ9Y2I1 1504 aa11.94□□□□□ -0.5
CPS1-201ENST00000233072 SUPT5HO00267 1087 aaKnown RBP11.54□□□□□ -0.56
CPS1-201ENST00000233072 PELP1Q8IZL8 1130 aaKnown RBP11.52□□□□□ -0.56
CPS1-201ENST00000233072 FAM9AQ8IZU1 332 aaPredicted RBP11.35□□□□□ -0.59
CPS1-201ENST00000233072 SHROOM4Q9ULL8 1493 aa11.33□□□□□ -0.6
CPS1-201ENST00000233072 APLP2Q06481 763 aa11.33□□□□□ -0.6
CPS1-201ENST00000233072 MYT1Q01538 1121 aa11.19□□□□□ -0.62
CPS1-201ENST00000233072 ZEB1P37275 1124 aaPredicted RBP11.05□□□□□ -0.64
CPS1-201ENST00000233072 EHMT2Q96KQ7 1210 aa11.01□□□□□ -0.65
CPS1-201ENST00000233072 CCER1Q8TC90 406 aaPredicted RBP10.99□□□□□ -0.65
CPS1-201ENST00000233072 CENPBP07199 599 aaPredicted RBP10.94□□□□□ -0.66
CPS1-201ENST00000233072 ERICH6Q7L0X2 663 aa10.9□□□□□ -0.67
CPS1-201ENST00000233072 TRIM41Q8WV44 630 aa10.86□□□□□ -0.67
CPS1-201ENST00000233072 PCGF6Q9BYE7 350 aa10.77□□□□□ -0.69
CPS1-201ENST00000233072 NEFLP07196 543 aa10.74□□□□□ -0.69
CPS1-201ENST00000233072 UBTFP17480 764 aaKnown RBP10.72□□□□□ -0.69
CPS1-201ENST00000233072 ATP1B4Q9UN42 357 aaPredicted RBP10.71□□□□□ -0.69
CPS1-201ENST00000233072 TTBK1Q5TCY1 1321 aaPredicted RBP10.71□□□□□ -0.7
CPS1-201ENST00000233072 RANGAP1P46060 587 aaPredicted RBP10.64□□□□□ -0.71
CPS1-201ENST00000233072 YTHDC1Q96MU7 727 aaKnown RBP10.55□□□□□ -0.72
CPS1-201ENST00000233072 TRIM26Q12899 539 aaPredicted RBP10.54□□□□□ -0.72
CPS1-201ENST00000233072 DAXXQ9UER7 740 aaPredicted RBP10.45□□□□□ -0.74
CPS1-201ENST00000233072 MYT1LQ9UL68 1186 aa10.4□□□□□ -0.74
CPS1-201ENST00000233072 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.38□□□□□ -0.75
CPS1-201ENST00000233072 HNRNPUL2Q1KMD3 747 aaKnown RBP10.38□□□□□ -0.75
CPS1-201ENST00000233072 HRCP23327 699 aa10.31□□□□□ -0.76
CPS1-201ENST00000233072 ITGAEP38570 1179 aa10.26□□□□□ -0.77
CPS1-201ENST00000233072 POLR3GLQ9BT43 218 aa10.26□□□□□ -0.77
CPS1-201ENST00000233072 CHIC1Q5VXU3 224 aa10.25□□□□□ -0.77
CPS1-201ENST00000233072 PPARGC1BQ86YN6 1023 aaKnown RBP10.23□□□□□ -0.77
CPS1-201ENST00000233072 ZNF316A6NFI3 1004 aaPredicted RBP10.21□□□□□ -0.78
CPS1-201ENST00000233072 RTL5Q5HYW3 569 aaPredicted RBP10.17□□□□□ -0.78
CPS1-201ENST00000233072 SLC4A1APQ9BWU0 796 aaKnown RBP10.15□□□□□ -0.78
CPS1-201ENST00000233072 FAM50AQ14320 339 aaKnown RBP10.15□□□□□ -0.79
CPS1-201ENST00000233072 ABCC9O60706 1549 aa10.14□□□□□ -0.79
CPS1-201ENST00000233072 TRIM52Q96A61 297 aa10.12□□□□□ -0.79
CPS1-201ENST00000233072 CLSPNQ9HAW4 1339 aa10.12□□□□□ -0.79
CPS1-201ENST00000233072 DIEXFQ68CQ4 756 aaKnown RBP10.1□□□□□ -0.79
CPS1-201ENST00000233072 LOC105371045A0A1W2PR82 267 aa10.1□□□□□ -0.79
CPS1-201ENST00000233072 ZBTB47Q9UFB7 747 aaPredicted RBP10.08□□□□□ -0.8
CPS1-201ENST00000233072 ANP32CO43423 234 aa10.07□□□□□ -0.8
CPS1-201ENST00000233072 CCDC180Q9P1Z9 1646 aa10.03□□□□□ -0.8
CPS1-201ENST00000233072 NEFMP07197 916 aa10.02□□□□□ -0.81
CPS1-201ENST00000233072 CDK11AQ9UQ88 783 aaPredicted RBP9.99□□□□□ -0.81
CPS1-201ENST00000233072 PABPN1Q86U42 306 aaKnown RBP eCLIP9.99□□□□□ -0.81
CPS1-201ENST00000233072 NEUROD1Q13562 356 aa9.98□□□□□ -0.81
CPS1-201ENST00000233072 CNGB1Q14028 1251 aaPredicted RBP9.97□□□□□ -0.81
CPS1-201ENST00000233072 CANXP27824 592 aaKnown RBP9.95□□□□□ -0.82
CPS1-201ENST00000233072 ZCCHC6Q5VYS8 1495 aaKnown RBP9.92□□□□□ -0.82
CPS1-201ENST00000233072 SCRIBQ14160 1630 aa9.91□□□□□ -0.82
CPS1-201ENST00000233072 ZNF326Q5BKZ1 582 aaKnown RBP9.9□□□□□ -0.82
CPS1-201ENST00000233072 CSRNP3Q8WYN3 585 aa9.9□□□□□ -0.82
CPS1-201ENST00000233072 FBLN2P98095 1184 aa9.89□□□□□ -0.83
CPS1-201ENST00000233072 ACIN1Q9UKV3 1341 aaKnown RBP9.88□□□□□ -0.83
CPS1-201ENST00000233072 GLIPR1L2Q4G1C9 344 aa9.87□□□□□ -0.83
CPS1-201ENST00000233072 DCAF1Q9Y4B6 1507 aa9.87□□□□□ -0.83
CPS1-201ENST00000233072 ANP32AP39687 249 aaKnown RBP9.86□□□□□ -0.83
CPS1-201ENST00000233072 BCANQ96GW7 911 aa9.84□□□□□ -0.83
CPS1-201ENST00000233072 ESF1Q9H501 851 aaKnown RBP9.83□□□□□ -0.84
CPS1-201ENST00000233072 TONSLQ96HA7 1378 aa9.83□□□□□ -0.84
CPS1-201ENST00000233072 RB1CC1Q8TDY2 1594 aa9.82□□□□□ -0.84
CPS1-201ENST00000233072 GTF3C3Q9Y5Q9 886 aa9.8□□□□□ -0.84
CPS1-201ENST00000233072 ANP32BQ92688 251 aaKnown RBP9.79□□□□□ -0.84
CPS1-201ENST00000233072 SLC24A1O60721 1099 aa9.78□□□□□ -0.84
CPS1-201ENST00000233072 ZNF777Q9ULD5 760 aaPredicted RBP9.78□□□□□ -0.84
CPS1-201ENST00000233072 NPM1P06748 294 aaKnown RBP eCLIP9.77□□□□□ -0.84
CPS1-201ENST00000233072 UPF2Q9HAU5 1272 aaKnown RBP9.77□□□□□ -0.85
CPS1-201ENST00000233072 EEA1Q15075 1411 aa9.77□□□□□ -0.85
CPS1-201ENST00000233072 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.76□□□□□ -0.85
CPS1-201ENST00000233072 STAG3Q9UJ98 1225 aa9.74□□□□□ -0.85
CPS1-201ENST00000233072 P3H3Q8IVL6 736 aa9.74□□□□□ -0.85
CPS1-201ENST00000233072 RSF1Q96T23 1441 aaPredicted RBP9.72□□□□□ -0.85
CPS1-201ENST00000233072 NACADO15069 1562 aa9.7□□□□□ -0.86
CPS1-201ENST00000233072 GOLGA3Q08378 1498 aa9.69□□□□□ -0.86
CPS1-201ENST00000233072 HSP90AA1P07900 732 aaKnown RBP9.67□□□□□ -0.86
CPS1-201ENST00000233072 MTUS2Q5JR59 1369 aa9.67□□□□□ -0.86
CPS1-201ENST00000233072 EIF5BO60841 1220 aaKnown RBP9.66□□□□□ -0.86
CPS1-201ENST00000233072 WDR43Q15061 677 aaKnown RBP eCLIP9.66□□□□□ -0.86
CPS1-201ENST00000233072 ARID3CA6NKF2 412 aa9.66□□□□□ -0.86
CPS1-201ENST00000233072 TSPY4P0CV99 314 aa9.65□□□□□ -0.86
CPS1-201ENST00000233072 TSPY10P0CW01 314 aa9.65□□□□□ -0.86
CPS1-201ENST00000233072 CHGAP10645 457 aaKnown RBP9.65□□□□□ -0.86
CPS1-201ENST00000233072 CLIP1P30622 1438 aa9.64□□□□□ -0.87
CPS1-201ENST00000233072 MYH16Q9H6N6 1097 aa9.63□□□□□ -0.87
CPS1-201ENST00000233072 NPM2Q86SE8 214 aaKnown RBP9.61□□□□□ -0.87
CPS1-201ENST00000233072 HNRNPUQ00839 825 aaKnown RBP eCLIP9.61□□□□□ -0.87
CPS1-201ENST00000233072 TMC1Q8TDI8 760 aa9.61□□□□□ -0.87
CPS1-201ENST00000233072 FKBP8Q14318 412 aa9.6□□□□□ -0.87
CPS1-201ENST00000233072 CHMP7Q8WUX9 453 aaPredicted RBP9.59□□□□□ -0.87
CPS1-201ENST00000233072 BAZ1BQ9UIG0 1483 aaKnown RBP9.59□□□□□ -0.87
CPS1-201ENST00000233072 DDRGK1Q96HY6 314 aa9.58□□□□□ -0.88
CPS1-201ENST00000233072 CDCA8Q53HL2 280 aa9.58□□□□□ -0.88
CPS1-201ENST00000233072 CEP164Q9UPV0 1460 aa9.58□□□□□ -0.88
CPS1-201ENST00000233072 BCL11AQ9H165 835 aa9.57□□□□□ -0.88
CPS1-201ENST00000233072 ANP32EQ9BTT0 268 aa9.57□□□□□ -0.88
CPS1-201ENST00000233072 CCDC136Q96JN2 1154 aa9.57□□□□□ -0.88
CPS1-201ENST00000233072 FAM9BQ8IZU0 186 aa9.56□□□□□ -0.88
CPS1-201ENST00000233072 KIF27Q86VH2 1401 aa9.56□□□□□ -0.88
CPS1-201ENST00000233072 EIF4G2P78344 907 aaKnown RBP eCLIP9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms