RNA–Protein interactions for RNA: ENST00000630962.1

SRP54-214, Transcript of signal recognition particle 54, humanhuman

TSL 5 BASIC

Gene SRP54, Length 162 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-214ENST00000630962 AEBP2Q6ZN18 517 aaPredicted RBP19.2■□□□□ 0.66
SRP54-214ENST00000630962 CHIC1Q5VXU3 224 aa18.8■□□□□ 0.6
SRP54-214ENST00000630962 SENP3Q9H4L4 574 aaPredicted RBP16.54■□□□□ 0.24
SRP54-214ENST00000630962 PHF23Q9BUL5 403 aaPredicted RBP16.39■□□□□ 0.21
SRP54-214ENST00000630962 PLPPR3Q6T4P5 718 aa15.3■□□□□ 0.04
SRP54-214ENST00000630962 FOXD1Q16676 465 aa15.21■□□□□ 0.03
SRP54-214ENST00000630962 ADRA2BP18089 450 aa14.49□□□□□ -0.09
SRP54-214ENST00000630962 PPP6R1Q9UPN7 881 aa14.47□□□□□ -0.09
SRP54-214ENST00000630962 PIAS4Q8N2W9 510 aaPredicted RBP14.38□□□□□ -0.11
SRP54-214ENST00000630962 MSH5O43196 834 aa14.25□□□□□ -0.13
SRP54-214ENST00000630962 SCAF1Q9H7N4 1312 aaKnown RBP13.53□□□□□ -0.24
SRP54-214ENST00000630962 PPP4R3CPQ6ZMV5 832 aa13.39□□□□□ -0.27
SRP54-214ENST00000630962 NCBP3Q53F19 620 aaKnown RBP13.16□□□□□ -0.3
SRP54-214ENST00000630962 MAPK8IP2Q13387 824 aaPredicted RBP13.13□□□□□ -0.31
SRP54-214ENST00000630962 DMRT2Q9Y5R5 561 aa13.13□□□□□ -0.31
SRP54-214ENST00000630962 CNKSR2Q8WXI2 1034 aa13.12□□□□□ -0.31
SRP54-214ENST00000630962 POTEDQ86YR6 584 aa13□□□□□ -0.33
SRP54-214ENST00000630962 RNF216Q9NWF9 866 aaPredicted RBP12.88□□□□□ -0.35
SRP54-214ENST00000630962 KCNA4P22459 653 aa12.87□□□□□ -0.35
SRP54-214ENST00000630962 HOXD11P31277 338 aaPredicted RBP12.82□□□□□ -0.36
SRP54-214ENST00000630962 NPM3O75607 178 aaKnown RBP12.78□□□□□ -0.36
SRP54-214ENST00000630962 DNAJC5BQ9UF47 199 aa12.59□□□□□ -0.39
SRP54-214ENST00000630962 DCAF8L1A6NGE4 600 aa12.54□□□□□ -0.4
SRP54-214ENST00000630962 SLC4A1APQ9BWU0 796 aaKnown RBP12.34□□□□□ -0.43
SRP54-214ENST00000630962 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.24□□□□□ -0.45
SRP54-214ENST00000630962 RNF39Q9H2S5 420 aa12.1□□□□□ -0.47
SRP54-214ENST00000630962 SLC4A2P04920 1241 aa12.05□□□□□ -0.48
SRP54-214ENST00000630962 C1QBPQ07021 282 aaKnown RBP12.04□□□□□ -0.48
SRP54-214ENST00000630962 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.99□□□□□ -0.49
SRP54-214ENST00000630962 HNRNPUL2Q1KMD3 747 aaKnown RBP11.99□□□□□ -0.49
SRP54-214ENST00000630962 FOXD4L1Q9NU39 408 aa11.99□□□□□ -0.49
SRP54-214ENST00000630962 APLP2Q06481 763 aa11.94□□□□□ -0.5
SRP54-214ENST00000630962 U3KPZ7 1027 aaPredicted RBP11.94□□□□□ -0.5
SRP54-214ENST00000630962 MYCNP04198 464 aaPredicted RBP11.93□□□□□ -0.5
SRP54-214ENST00000630962 CACNB1Q02641 598 aaPredicted RBP11.89□□□□□ -0.51
SRP54-214ENST00000630962 SAMD1Q6SPF0 538 aaPredicted RBP11.88□□□□□ -0.51
SRP54-214ENST00000630962 ZBTB22O15209 634 aa11.77□□□□□ -0.53
SRP54-214ENST00000630962 EHMT2Q96KQ7 1210 aa11.76□□□□□ -0.53
SRP54-214ENST00000630962 ATXN8OSP0DMR3 200 aa11.69□□□□□ -0.54
SRP54-214ENST00000630962 CSRNP3Q8WYN3 585 aa11.69□□□□□ -0.54
SRP54-214ENST00000630962 ZNF219Q9P2Y4 722 aaPredicted RBP11.67□□□□□ -0.54
SRP54-214ENST00000630962 CAPN15O75808 1086 aa11.65□□□□□ -0.54
SRP54-214ENST00000630962 SPINK5Q9NQ38 1064 aaPredicted RBP11.59□□□□□ -0.55
SRP54-214ENST00000630962 TRHP20396 242 aaPredicted RBP11.54□□□□□ -0.56
SRP54-214ENST00000630962 DSG3P32926 999 aa11.45□□□□□ -0.58
SRP54-214ENST00000630962 ATF5Q9Y2D1 282 aaPredicted RBP11.4□□□□□ -0.58
SRP54-214ENST00000630962 POLA2Q14181 598 aa11.34□□□□□ -0.59
SRP54-214ENST00000630962 ZBTB12Q9Y330 459 aaPredicted RBP11.34□□□□□ -0.59
SRP54-214ENST00000630962 ABCB7O75027 752 aa11.33□□□□□ -0.6
SRP54-214ENST00000630962 FBLN2P98095 1184 aa11.19□□□□□ -0.62
SRP54-214ENST00000630962 RBM42Q9BTD8 480 aaKnown RBP11.09□□□□□ -0.63
SRP54-214ENST00000630962 SPDYE2BA6NHP3 402 aa10.94□□□□□ -0.66
SRP54-214ENST00000630962 SPDYE6P0CI01 402 aa10.94□□□□□ -0.66
SRP54-214ENST00000630962 MKRN4PQ13434 485 aaPredicted RBP10.94□□□□□ -0.66
SRP54-214ENST00000630962 SPDYE2Q495Y8 402 aa10.94□□□□□ -0.66
SRP54-214ENST00000630962 OSCARQ8IYS5 282 aa10.91□□□□□ -0.66
SRP54-214ENST00000630962 AKT1S1Q96B36 256 aa10.87□□□□□ -0.67
SRP54-214ENST00000630962 ZNF692Q9BU19 519 aaPredicted RBP10.83□□□□□ -0.68
SRP54-214ENST00000630962 SSUH2Q9Y2M2 353 aa10.77□□□□□ -0.69
SRP54-214ENST00000630962 SPDYE4A6NLX3 237 aa10.76□□□□□ -0.69
SRP54-214ENST00000630962 REM2Q8IYK8 340 aaPredicted RBP10.67□□□□□ -0.7
SRP54-214ENST00000630962 SPDYE1Q8NFV5 336 aaPredicted RBP10.65□□□□□ -0.7
SRP54-214ENST00000630962 PABPN1Q86U42 306 aaKnown RBP eCLIP10.64□□□□□ -0.71
SRP54-214ENST00000630962 FKBP8Q14318 412 aa10.62□□□□□ -0.71
SRP54-214ENST00000630962 STAG3Q9UJ98 1225 aa10.62□□□□□ -0.71
SRP54-214ENST00000630962 PROM2Q8N271 834 aa10.56□□□□□ -0.72
SRP54-214ENST00000630962 CHRDL2Q6WN34 429 aa10.54□□□□□ -0.72
SRP54-214ENST00000630962 PITPNM1O00562 1244 aa10.53□□□□□ -0.72
SRP54-214ENST00000630962 CLEC11AQ9Y240 323 aa10.52□□□□□ -0.73
SRP54-214ENST00000630962 PRR29P0C7W0 189 aa10.46□□□□□ -0.73
SRP54-214ENST00000630962 FBXO3Q9UK99 471 aa10.46□□□□□ -0.73
SRP54-214ENST00000630962 FXR2P51116 673 aaKnown RBP eCLIP10.39□□□□□ -0.75
SRP54-214ENST00000630962 PLEKHG5O94827 1062 aa10.36□□□□□ -0.75
SRP54-214ENST00000630962 PIP4P2Q8N4L2 257 aa10.35□□□□□ -0.75
SRP54-214ENST00000630962 POTEHQ6S545 545 aa10.32□□□□□ -0.76
SRP54-214ENST00000630962 PRKAR2AP13861 404 aaKnown RBP10.29□□□□□ -0.76
SRP54-214ENST00000630962 ZBTB47Q9UFB7 747 aaPredicted RBP10.26□□□□□ -0.77
SRP54-214ENST00000630962 MIER1Q8N108 512 aa10.24□□□□□ -0.77
SRP54-214ENST00000630962 PLCD3Q8N3E9 789 aa10.23□□□□□ -0.77
SRP54-214ENST00000630962 NPM1P06748 294 aaKnown RBP eCLIP10.21□□□□□ -0.77
SRP54-214ENST00000630962 CREBZFQ9NS37 354 aa10.21□□□□□ -0.77
SRP54-214ENST00000630962 VASPP50552 380 aaPredicted RBP10.18□□□□□ -0.78
SRP54-214ENST00000630962 CHADLQ6NUI6 762 aa10.18□□□□□ -0.78
SRP54-214ENST00000630962 FARP1Q9Y4F1 1045 aaPredicted RBP10.17□□□□□ -0.78
SRP54-214ENST00000630962 HAX1O00165 279 aa10.09□□□□□ -0.79
SRP54-214ENST00000630962 PAK3O75914 559 aaPredicted RBP10.08□□□□□ -0.8
SRP54-214ENST00000630962 MNX1P50219 401 aaPredicted RBP10.07□□□□□ -0.8
SRP54-214ENST00000630962 KLHL34Q8N239 644 aa10.07□□□□□ -0.8
SRP54-214ENST00000630962 C19orf67A6NJJ6 358 aa10.04□□□□□ -0.8
SRP54-214ENST00000630962 CLCN6P51797 869 aa10.02□□□□□ -0.81
SRP54-214ENST00000630962 CD44P16070 742 aaKnown RBP10.01□□□□□ -0.81
SRP54-214ENST00000630962 SPOCK2Q92563 424 aa9.97□□□□□ -0.81
SRP54-214ENST00000630962 IFNLR1Q8IU57 520 aaPredicted RBP9.96□□□□□ -0.82
SRP54-214ENST00000630962 FAM212AQ96EL1 285 aa9.96□□□□□ -0.82
SRP54-214ENST00000630962 GSE1Q14687 1217 aa9.93□□□□□ -0.82
SRP54-214ENST00000630962 ZRANB1Q9UGI0 708 aa9.93□□□□□ -0.82
SRP54-214ENST00000630962 NUBP1P53384 320 aa9.92□□□□□ -0.82
SRP54-214ENST00000630962 ZNF579Q8NAF0 562 aaKnown RBP9.9□□□□□ -0.82
SRP54-214ENST00000630962 SP7Q8TDD2 431 aaPredicted RBP9.9□□□□□ -0.82
SRP54-214ENST00000630962 TSPYL2Q9H2G4 693 aaPredicted RBP9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms