Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 LINC01081-201ENST00000597373 465 ntTSL 5 BASIC6.82□□□□□ -1.32
MSX1P28360 AL589935.1-201ENST00000602418 488 ntTSL 4 BASIC6.82□□□□□ -1.32
MSX1P28360 MIR98-201ENST00000606724 119 ntBASIC6.82□□□□□ -1.32
MSX1P28360 AL137078.2-201ENST00000615740 318 ntTSL 5 BASIC6.82□□□□□ -1.32
MSX1P28360 AC244100.4-201ENST00000617747 388 ntBASIC6.82□□□□□ -1.32
MSX1P28360 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC6.82□□□□□ -1.32
MSX1P28360 LINC01955-201ENST00000626392 792 ntTSL 5 BASIC6.82□□□□□ -1.32
MSX1P28360 TTN-AS1-265ENST00000627661 806 ntTSL 5 BASIC6.82□□□□□ -1.32
MSX1P28360 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC6.82□□□□□ -1.32
MSX1P28360 AC233280.20-201ENST00000637412 416 ntBASIC6.82□□□□□ -1.32
MSX1P28360 AC119674.1-212ENST00000641155 993 ntBASIC6.82□□□□□ -1.32
MSX1P28360 BDNF-212ENST00000525528 4766 ntAPPRIS P1 BASIC6.82□□□□□ -1.32
MSX1P28360 NRCAM-204ENST00000379028 6685 ntAPPRIS ALT2 TSL 5 BASIC6.82□□□□□ -1.32
MSX1P28360 LRTOMT-210ENST00000447974 2007 ntTSL 2 BASIC6.82□□□□□ -1.32
MSX1P28360 PROX1-AS1-202ENST00000433082 5266 ntTSL 5 BASIC6.82□□□□□ -1.32
MSX1P28360 NPIPB15-201ENST00000429990 1428 ntAPPRIS P1 TSL 5 BASIC6.82□□□□□ -1.32
MSX1P28360 MSL3-206ENST00000380693 2377 ntTSL 2 BASIC6.82□□□□□ -1.32
MSX1P28360 FBXO36-202ENST00000373652 3120 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
MSX1P28360 MEF2C-244ENST00000636998 5936 ntTSL 5 BASIC6.82□□□□□ -1.32
MSX1P28360 BEST3-205ENST00000488961 2878 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
MSX1P28360 LINC00622-201ENST00000562811 1570 ntBASIC6.82□□□□□ -1.32
MSX1P28360 PRKAR2A-AS1-202ENST00000416209 3447 ntTSL 2 BASIC6.82□□□□□ -1.32
MSX1P28360 CPM-202ENST00000546373 2116 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
MSX1P28360 STOM-201ENST00000286713 3010 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
MSX1P28360 OLR1-201ENST00000309539 2462 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
MSX1P28360 ANKRD30A-205ENST00000611781 4474 ntAPPRIS ALT2 TSL 5 BASIC6.82□□□□□ -1.32
MSX1P28360 FIGNL1-213ENST00000615084 3368 ntAPPRIS P1 TSL 3 BASIC6.82□□□□□ -1.32
MSX1P28360 GPN1-203ENST00000424214 1725 ntTSL 2 BASIC6.81□□□□□ -1.32
MSX1P28360 LINC01095-202ENST00000507726 1715 ntTSL 2 BASIC6.81□□□□□ -1.32
MSX1P28360 OR51M1-203ENST00000642046 4092 ntAPPRIS P1 BASIC6.81□□□□□ -1.32
MSX1P28360 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
MSX1P28360 TCF12-213ENST00000559703 1544 ntTSL 5 BASIC6.81□□□□□ -1.32
MSX1P28360 CAP1-206ENST00000372805 2217 ntAPPRIS P3 TSL 1 (best) BASIC6.81□□□□□ -1.32
MSX1P28360 CS-212ENST00000548567 3057 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
MSX1P28360 KDM4C-205ENST00000428870 3039 ntTSL 2 BASIC6.81□□□□□ -1.32
MSX1P28360 CARD8-217ENST00000520753 3041 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
MSX1P28360 GRIA4-212ENST00000530497 5059 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
MSX1P28360 AP005131.1-201ENST00000585366 4745 ntTSL 5 BASIC6.81□□□□□ -1.32
MSX1P28360 BRD8-201ENST00000230901 3198 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
MSX1P28360 LINC02275-201ENST00000508313 4365 ntTSL 2 BASIC6.81□□□□□ -1.32
MSX1P28360 DNAJC5G-203ENST00000404433 1647 ntAPPRIS P1 TSL 5 BASIC6.81□□□□□ -1.32
MSX1P28360 AL078621.1-201ENST00000272567 768 ntBASIC6.81□□□□□ -1.32
MSX1P28360 FCAR-204ENST00000359272 828 ntAPPRIS ALT2 TSL 1 (best) BASIC6.81□□□□□ -1.32
MSX1P28360 RNU6-666P-201ENST00000363499 107 ntBASIC6.81□□□□□ -1.32
MSX1P28360 RNU6-1318P-201ENST00000365389 103 ntBASIC6.81□□□□□ -1.32
MSX1P28360 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
MSX1P28360 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
MSX1P28360 Y_RNA.387-201ENST00000383918 102 ntBASIC6.81□□□□□ -1.32
MSX1P28360 RNU6-196P-201ENST00000384315 107 ntBASIC6.81□□□□□ -1.32
MSX1P28360 IGLJ2-201ENST00000390322 175 ntAPPRIS P1 BASIC6.81□□□□□ -1.32
MSX1P28360 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC6.81□□□□□ -1.32
MSX1P28360 Y_RNA.579-201ENST00000390939 94 ntBASIC6.81□□□□□ -1.32
MSX1P28360 CYTOR-207ENST00000414584 772 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
MSX1P28360 AL773545.1-201ENST00000425632 347 ntTSL 5 BASIC6.81□□□□□ -1.32
MSX1P28360 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC6.81□□□□□ -1.32
MSX1P28360 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC6.81□□□□□ -1.32
MSX1P28360 AL080316.1-201ENST00000432438 499 ntTSL 2 BASIC6.81□□□□□ -1.32
MSX1P28360 GTF2IP13-201ENST00000438487 386 ntBASIC6.81□□□□□ -1.32
MSX1P28360 AC016691.1-201ENST00000441321 413 ntBASIC6.81□□□□□ -1.32
MSX1P28360 ALMS1-IT1-201ENST00000441587 2107 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
MSX1P28360 RPL17P49-201ENST00000443728 411 ntBASIC6.81□□□□□ -1.32
MSX1P28360 HGF-206ENST00000444829 1184 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
MSX1P28360 AL451074.4-201ENST00000447545 470 ntBASIC6.81□□□□□ -1.32
MSX1P28360 RPL7P59-201ENST00000447700 943 ntBASIC6.81□□□□□ -1.32
MSX1P28360 AC093166.3-201ENST00000448785 303 ntBASIC6.81□□□□□ -1.32
MSX1P28360 ST13P21-201ENST00000453250 1098 ntBASIC6.81□□□□□ -1.32
MSX1P28360 AC096543.1-201ENST00000455038 823 ntTSL 3 BASIC6.81□□□□□ -1.32
MSX1P28360 NCAPH-205ENST00000455200 2952 ntAPPRIS ALT2 TSL 5 BASIC6.81□□□□□ -1.32
MSX1P28360 AC013429.1-201ENST00000456604 422 ntBASIC6.81□□□□□ -1.32
MSX1P28360 MTCO1P42-201ENST00000457379 726 ntBASIC6.81□□□□□ -1.32
MSX1P28360 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC6.81□□□□□ -1.32
MSX1P28360 MEMO1P3-201ENST00000459811 302 ntBASIC6.81□□□□□ -1.32
MSX1P28360 AC099328.2-201ENST00000465347 455 ntTSL 3 BASIC6.81□□□□□ -1.32
MSX1P28360 AC017015.1-201ENST00000477387 286 ntBASIC6.81□□□□□ -1.32
MSX1P28360 AC009153.1-201ENST00000485799 496 ntBASIC6.81□□□□□ -1.32
MSX1P28360 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC6.81□□□□□ -1.32
MSX1P28360 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC6.81□□□□□ -1.32
MSX1P28360 RN7SL776P-201ENST00000493390 268 ntBASIC6.81□□□□□ -1.32
MSX1P28360 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC6.81□□□□□ -1.32
MSX1P28360 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC6.81□□□□□ -1.32
MSX1P28360 Y_RNA.711-201ENST00000516993 102 ntBASIC6.81□□□□□ -1.32
MSX1P28360 TPM3P3-201ENST00000521343 354 ntBASIC6.81□□□□□ -1.32
MSX1P28360 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC6.81□□□□□ -1.32
MSX1P28360 LGALS8-217ENST00000525042 903 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
MSX1P28360 AP000880.1-202ENST00000526487 588 ntTSL 3 BASIC6.81□□□□□ -1.32
MSX1P28360 OR5B19P-201ENST00000531766 928 ntBASIC6.81□□□□□ -1.32
MSX1P28360 NF1P12-201ENST00000549593 583 ntBASIC6.81□□□□□ -1.32
MSX1P28360 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC6.81□□□□□ -1.32
MSX1P28360 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC6.81□□□□□ -1.32
MSX1P28360 RPL3P13-201ENST00000550415 216 ntBASIC6.81□□□□□ -1.32
MSX1P28360 POLR2KP1-201ENST00000553226 168 ntBASIC6.81□□□□□ -1.32
MSX1P28360 AL109766.1-201ENST00000555080 552 ntBASIC6.81□□□□□ -1.32
MSX1P28360 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC6.81□□□□□ -1.32
MSX1P28360 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC6.81□□□□□ -1.32
MSX1P28360 AC019322.1-201ENST00000571869 389 ntBASIC6.81□□□□□ -1.32
MSX1P28360 AC011193.2-201ENST00000582638 367 ntBASIC6.81□□□□□ -1.32
MSX1P28360 AL589935.1-223ENST00000587015 808 ntTSL 5 BASIC6.81□□□□□ -1.32
MSX1P28360 AC090236.2-201ENST00000587933 1101 ntBASIC6.81□□□□□ -1.32
MSX1P28360 OR7E19P-202ENST00000589942 844 ntBASIC6.81□□□□□ -1.32
MSX1P28360 SSX2B-202ENST00000596480 1291 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 113.3 ms