Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
USH1CQ9Y6N9 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
USH1CQ9Y6N9 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
USH1CQ9Y6N9 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC19.45■□□□□ 0.7
USH1CQ9Y6N9 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC19.45■□□□□ 0.7
USH1CQ9Y6N9 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC19.45■□□□□ 0.7
USH1CQ9Y6N9 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
USH1CQ9Y6N9 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
USH1CQ9Y6N9 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
USH1CQ9Y6N9 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC19.44■□□□□ 0.7
USH1CQ9Y6N9 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
USH1CQ9Y6N9 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC19.44■□□□□ 0.7
USH1CQ9Y6N9 COMP-202ENST00000425807 2292 ntTSL 2 BASIC19.44■□□□□ 0.7
USH1CQ9Y6N9 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
USH1CQ9Y6N9 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
USH1CQ9Y6N9 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
USH1CQ9Y6N9 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC19.44■□□□□ 0.7
USH1CQ9Y6N9 CD44-222ENST00000526025 1052 ntTSL 2 BASIC19.44■□□□□ 0.7
USH1CQ9Y6N9 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC19.44■□□□□ 0.7
USH1CQ9Y6N9 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC19.44■□□□□ 0.7
USH1CQ9Y6N9 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
USH1CQ9Y6N9 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
USH1CQ9Y6N9 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
USH1CQ9Y6N9 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
USH1CQ9Y6N9 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
USH1CQ9Y6N9 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
USH1CQ9Y6N9 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
USH1CQ9Y6N9 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
USH1CQ9Y6N9 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
USH1CQ9Y6N9 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
USH1CQ9Y6N9 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC19.43■□□□□ 0.7
USH1CQ9Y6N9 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USH1CQ9Y6N9 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
USH1CQ9Y6N9 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
USH1CQ9Y6N9 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USH1CQ9Y6N9 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USH1CQ9Y6N9 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
USH1CQ9Y6N9 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
USH1CQ9Y6N9 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
USH1CQ9Y6N9 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC19.43■□□□□ 0.7
USH1CQ9Y6N9 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
USH1CQ9Y6N9 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC19.43■□□□□ 0.7
USH1CQ9Y6N9 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
USH1CQ9Y6N9 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC19.43■□□□□ 0.7
USH1CQ9Y6N9 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC19.43■□□□□ 0.7
USH1CQ9Y6N9 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC19.43■□□□□ 0.7
USH1CQ9Y6N9 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC19.43■□□□□ 0.7
USH1CQ9Y6N9 AC110285.6-201ENST00000617652 491 ntBASIC19.43■□□□□ 0.7
USH1CQ9Y6N9 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
USH1CQ9Y6N9 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC19.43■□□□□ 0.7
USH1CQ9Y6N9 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
USH1CQ9Y6N9 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USH1CQ9Y6N9 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
USH1CQ9Y6N9 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC19.43■□□□□ 0.7
USH1CQ9Y6N9 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
USH1CQ9Y6N9 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
USH1CQ9Y6N9 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
USH1CQ9Y6N9 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
USH1CQ9Y6N9 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
USH1CQ9Y6N9 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
USH1CQ9Y6N9 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
USH1CQ9Y6N9 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
USH1CQ9Y6N9 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USH1CQ9Y6N9 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
USH1CQ9Y6N9 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
USH1CQ9Y6N9 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC19.42■□□□□ 0.7
USH1CQ9Y6N9 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USH1CQ9Y6N9 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USH1CQ9Y6N9 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC19.42■□□□□ 0.7
USH1CQ9Y6N9 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USH1CQ9Y6N9 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
USH1CQ9Y6N9 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC19.42■□□□□ 0.7
USH1CQ9Y6N9 PEMT-206ENST00000435340 960 ntTSL 5 BASIC19.42■□□□□ 0.7
USH1CQ9Y6N9 CDV3P1-201ENST00000471403 739 ntBASIC19.42■□□□□ 0.7
USH1CQ9Y6N9 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC19.42■□□□□ 0.7
USH1CQ9Y6N9 RHOF-204ENST00000537265 699 ntTSL 2 BASIC19.42■□□□□ 0.7
USH1CQ9Y6N9 AC131212.1-201ENST00000613771 668 ntBASIC19.42■□□□□ 0.7
USH1CQ9Y6N9 AL356652.1-201ENST00000615962 565 ntBASIC19.42■□□□□ 0.7
USH1CQ9Y6N9 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC19.42■□□□□ 0.7
USH1CQ9Y6N9 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USH1CQ9Y6N9 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USH1CQ9Y6N9 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
USH1CQ9Y6N9 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC19.42■□□□□ 0.7
USH1CQ9Y6N9 AC008406.3-201ENST00000620001 1374 ntBASIC19.42■□□□□ 0.7
USH1CQ9Y6N9 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USH1CQ9Y6N9 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USH1CQ9Y6N9 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
USH1CQ9Y6N9 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC19.42■□□□□ 0.7
USH1CQ9Y6N9 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
USH1CQ9Y6N9 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
USH1CQ9Y6N9 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USH1CQ9Y6N9 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC19.41■□□□□ 0.7
USH1CQ9Y6N9 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
USH1CQ9Y6N9 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
USH1CQ9Y6N9 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC19.41■□□□□ 0.7
USH1CQ9Y6N9 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
USH1CQ9Y6N9 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
USH1CQ9Y6N9 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USH1CQ9Y6N9 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC19.41■□□□□ 0.7
USH1CQ9Y6N9 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms