Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
USP3Q9Y6I4 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC20.48■□□□□ 0.87
USP3Q9Y6I4 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
USP3Q9Y6I4 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC20.48■□□□□ 0.87
USP3Q9Y6I4 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC20.48■□□□□ 0.87
USP3Q9Y6I4 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC20.48■□□□□ 0.87
USP3Q9Y6I4 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC20.48■□□□□ 0.87
USP3Q9Y6I4 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC20.48■□□□□ 0.87
USP3Q9Y6I4 TSPY7P-201ENST00000431358 1114 ntBASIC20.48■□□□□ 0.87
USP3Q9Y6I4 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC20.48■□□□□ 0.87
USP3Q9Y6I4 PENK-204ENST00000518770 863 ntTSL 2 BASIC20.48■□□□□ 0.87
USP3Q9Y6I4 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC20.48■□□□□ 0.87
USP3Q9Y6I4 CD177P1-201ENST00000606252 935 ntBASIC20.48■□□□□ 0.87
USP3Q9Y6I4 AL445675.2-201ENST00000620291 557 ntBASIC20.48■□□□□ 0.87
USP3Q9Y6I4 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC20.48■□□□□ 0.87
USP3Q9Y6I4 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
USP3Q9Y6I4 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
USP3Q9Y6I4 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC20.48■□□□□ 0.87
USP3Q9Y6I4 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC20.48■□□□□ 0.87
USP3Q9Y6I4 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
USP3Q9Y6I4 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
USP3Q9Y6I4 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC20.48■□□□□ 0.87
USP3Q9Y6I4 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
USP3Q9Y6I4 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC20.48■□□□□ 0.87
USP3Q9Y6I4 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC20.48■□□□□ 0.87
USP3Q9Y6I4 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
USP3Q9Y6I4 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC20.47■□□□□ 0.87
USP3Q9Y6I4 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC20.47■□□□□ 0.87
USP3Q9Y6I4 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
USP3Q9Y6I4 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
USP3Q9Y6I4 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
USP3Q9Y6I4 FAM197Y1-201ENST00000421178 764 ntBASIC20.47■□□□□ 0.87
USP3Q9Y6I4 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
USP3Q9Y6I4 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC20.47■□□□□ 0.87
USP3Q9Y6I4 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC20.47■□□□□ 0.87
USP3Q9Y6I4 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC20.47■□□□□ 0.87
USP3Q9Y6I4 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC20.47■□□□□ 0.87
USP3Q9Y6I4 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC20.47■□□□□ 0.87
USP3Q9Y6I4 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC20.47■□□□□ 0.87
USP3Q9Y6I4 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC20.47■□□□□ 0.87
USP3Q9Y6I4 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC20.47■□□□□ 0.87
USP3Q9Y6I4 HLA-A-209ENST00000638375 975 ntBASIC20.47■□□□□ 0.87
USP3Q9Y6I4 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC20.47■□□□□ 0.87
USP3Q9Y6I4 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
USP3Q9Y6I4 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
USP3Q9Y6I4 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
USP3Q9Y6I4 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
USP3Q9Y6I4 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
USP3Q9Y6I4 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
USP3Q9Y6I4 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC20.47■□□□□ 0.87
USP3Q9Y6I4 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC20.47■□□□□ 0.87
USP3Q9Y6I4 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC20.46■□□□□ 0.87
USP3Q9Y6I4 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
USP3Q9Y6I4 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
USP3Q9Y6I4 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC20.46■□□□□ 0.87
USP3Q9Y6I4 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
USP3Q9Y6I4 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
USP3Q9Y6I4 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
USP3Q9Y6I4 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
USP3Q9Y6I4 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
USP3Q9Y6I4 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
USP3Q9Y6I4 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC20.46■□□□□ 0.87
USP3Q9Y6I4 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC20.46■□□□□ 0.87
USP3Q9Y6I4 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC20.46■□□□□ 0.87
USP3Q9Y6I4 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
USP3Q9Y6I4 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
USP3Q9Y6I4 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC20.46■□□□□ 0.87
USP3Q9Y6I4 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
USP3Q9Y6I4 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
USP3Q9Y6I4 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
USP3Q9Y6I4 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC20.45■□□□□ 0.86
USP3Q9Y6I4 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
USP3Q9Y6I4 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
USP3Q9Y6I4 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC20.45■□□□□ 0.86
USP3Q9Y6I4 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
USP3Q9Y6I4 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
USP3Q9Y6I4 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
USP3Q9Y6I4 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
USP3Q9Y6I4 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC20.45■□□□□ 0.86
USP3Q9Y6I4 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
USP3Q9Y6I4 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
USP3Q9Y6I4 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC20.45■□□□□ 0.86
USP3Q9Y6I4 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
USP3Q9Y6I4 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC20.45■□□□□ 0.86
USP3Q9Y6I4 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
USP3Q9Y6I4 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
USP3Q9Y6I4 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
USP3Q9Y6I4 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
USP3Q9Y6I4 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC20.45■□□□□ 0.86
USP3Q9Y6I4 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC20.45■□□□□ 0.86
USP3Q9Y6I4 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
USP3Q9Y6I4 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
USP3Q9Y6I4 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
USP3Q9Y6I4 KRT16P1-201ENST00000399124 1418 ntBASIC20.44■□□□□ 0.86
USP3Q9Y6I4 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
USP3Q9Y6I4 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
USP3Q9Y6I4 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
USP3Q9Y6I4 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
USP3Q9Y6I4 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC20.44■□□□□ 0.86
USP3Q9Y6I4 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC20.44■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms