Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 GOLGA2P11-201ENST00000562660 1621 ntBASIC16.8■□□□□ 0.28
CHMP1AQ9HD42 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CHMP1AQ9HD42 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC16.8■□□□□ 0.28
CHMP1AQ9HD42 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CHMP1AQ9HD42 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
CHMP1AQ9HD42 PODN-203ENST00000395871 2744 ntTSL 5 BASIC16.8■□□□□ 0.28
CHMP1AQ9HD42 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CHMP1AQ9HD42 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC16.8■□□□□ 0.28
CHMP1AQ9HD42 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC16.8■□□□□ 0.28
CHMP1AQ9HD42 MOK-225ENST00000522867 1883 ntTSL 5 BASIC16.8■□□□□ 0.28
CHMP1AQ9HD42 CYP21A1P-202ENST00000354927 1481 ntBASIC16.8■□□□□ 0.28
CHMP1AQ9HD42 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC16.8■□□□□ 0.28
CHMP1AQ9HD42 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC16.8■□□□□ 0.28
CHMP1AQ9HD42 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CHMP1AQ9HD42 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
CHMP1AQ9HD42 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CHMP1AQ9HD42 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CHMP1AQ9HD42 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC16.79■□□□□ 0.28
CHMP1AQ9HD42 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CHMP1AQ9HD42 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC16.79■□□□□ 0.28
CHMP1AQ9HD42 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
CHMP1AQ9HD42 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC16.79■□□□□ 0.28
CHMP1AQ9HD42 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CHMP1AQ9HD42 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CHMP1AQ9HD42 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC16.79■□□□□ 0.28
CHMP1AQ9HD42 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
CHMP1AQ9HD42 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
CHMP1AQ9HD42 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC16.79■□□□□ 0.28
CHMP1AQ9HD42 TFG-210ENST00000620299 1289 ntTSL 5 BASIC16.79■□□□□ 0.28
CHMP1AQ9HD42 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CHMP1AQ9HD42 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC16.79■□□□□ 0.28
CHMP1AQ9HD42 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC16.79■□□□□ 0.28
CHMP1AQ9HD42 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CHMP1AQ9HD42 AC093503.3-201ENST00000624917 2352 ntBASIC16.79■□□□□ 0.28
CHMP1AQ9HD42 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC16.79■□□□□ 0.28
CHMP1AQ9HD42 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC16.79■□□□□ 0.28
CHMP1AQ9HD42 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
CHMP1AQ9HD42 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC16.79■□□□□ 0.28
CHMP1AQ9HD42 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC16.78■□□□□ 0.28
CHMP1AQ9HD42 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHMP1AQ9HD42 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
CHMP1AQ9HD42 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CHMP1AQ9HD42 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHMP1AQ9HD42 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC16.78■□□□□ 0.28
CHMP1AQ9HD42 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
CHMP1AQ9HD42 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHMP1AQ9HD42 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHMP1AQ9HD42 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHMP1AQ9HD42 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHMP1AQ9HD42 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHMP1AQ9HD42 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CHMP1AQ9HD42 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHMP1AQ9HD42 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CHMP1AQ9HD42 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC16.78■□□□□ 0.28
CHMP1AQ9HD42 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC16.78■□□□□ 0.28
CHMP1AQ9HD42 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CHMP1AQ9HD42 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC16.78■□□□□ 0.28
CHMP1AQ9HD42 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
CHMP1AQ9HD42 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC16.78■□□□□ 0.28
CHMP1AQ9HD42 NTF6G-201ENST00000591094 616 ntBASIC16.78■□□□□ 0.28
CHMP1AQ9HD42 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHMP1AQ9HD42 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHMP1AQ9HD42 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CHMP1AQ9HD42 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CHMP1AQ9HD42 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHMP1AQ9HD42 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CHMP1AQ9HD42 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC16.78■□□□□ 0.28
CHMP1AQ9HD42 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
CHMP1AQ9HD42 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
CHMP1AQ9HD42 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
CHMP1AQ9HD42 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CHMP1AQ9HD42 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
CHMP1AQ9HD42 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CHMP1AQ9HD42 POLI-202ENST00000406285 2030 ntTSL 2 BASIC16.77■□□□□ 0.28
CHMP1AQ9HD42 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC16.77■□□□□ 0.28
CHMP1AQ9HD42 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC16.77■□□□□ 0.28
CHMP1AQ9HD42 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
CHMP1AQ9HD42 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC16.77■□□□□ 0.28
CHMP1AQ9HD42 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CHMP1AQ9HD42 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC16.77■□□□□ 0.28
CHMP1AQ9HD42 KRT18P61-201ENST00000585825 1298 ntBASIC16.77■□□□□ 0.28
CHMP1AQ9HD42 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
CHMP1AQ9HD42 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC16.77■□□□□ 0.28
CHMP1AQ9HD42 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
CHMP1AQ9HD42 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CHMP1AQ9HD42 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
CHMP1AQ9HD42 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC16.77■□□□□ 0.27
CHMP1AQ9HD42 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC16.77■□□□□ 0.27
CHMP1AQ9HD42 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
CHMP1AQ9HD42 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC16.77■□□□□ 0.27
CHMP1AQ9HD42 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CHMP1AQ9HD42 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CHMP1AQ9HD42 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC16.77■□□□□ 0.27
CHMP1AQ9HD42 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC16.77■□□□□ 0.27
CHMP1AQ9HD42 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CHMP1AQ9HD42 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC16.76■□□□□ 0.27
CHMP1AQ9HD42 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CHMP1AQ9HD42 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CHMP1AQ9HD42 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CHMP1AQ9HD42 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms