Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 MIR718-201ENST00000390190 70 ntBASIC19.39■□□□□ 0.69
TRIM39Q9HCM9 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM39Q9HCM9 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM39Q9HCM9 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
TRIM39Q9HCM9 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM39Q9HCM9 AC093827.2-201ENST00000512654 315 ntBASIC19.39■□□□□ 0.69
TRIM39Q9HCM9 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
TRIM39Q9HCM9 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM39Q9HCM9 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
TRIM39Q9HCM9 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
TRIM39Q9HCM9 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC19.39■□□□□ 0.69
TRIM39Q9HCM9 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM39Q9HCM9 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC19.39■□□□□ 0.69
TRIM39Q9HCM9 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM39Q9HCM9 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM39Q9HCM9 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM39Q9HCM9 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC19.39■□□□□ 0.69
TRIM39Q9HCM9 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM39Q9HCM9 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM39Q9HCM9 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM39Q9HCM9 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
TRIM39Q9HCM9 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM39Q9HCM9 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM39Q9HCM9 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM39Q9HCM9 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
TRIM39Q9HCM9 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM39Q9HCM9 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
TRIM39Q9HCM9 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC19.38■□□□□ 0.69
TRIM39Q9HCM9 RPS2P55-201ENST00000397318 883 ntBASIC19.38■□□□□ 0.69
TRIM39Q9HCM9 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC19.38■□□□□ 0.69
TRIM39Q9HCM9 TUBB8P6-201ENST00000436895 1288 ntBASIC19.38■□□□□ 0.69
TRIM39Q9HCM9 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM39Q9HCM9 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM39Q9HCM9 RPS2P4-201ENST00000476944 856 ntBASIC19.38■□□□□ 0.69
TRIM39Q9HCM9 AC107956.1-201ENST00000494359 873 ntBASIC19.38■□□□□ 0.69
TRIM39Q9HCM9 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM39Q9HCM9 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC19.38■□□□□ 0.69
TRIM39Q9HCM9 HTR7P1-201ENST00000538670 1336 ntBASIC19.38■□□□□ 0.69
TRIM39Q9HCM9 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM39Q9HCM9 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
TRIM39Q9HCM9 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM39Q9HCM9 Z99916.2-201ENST00000604037 246 ntBASIC19.38■□□□□ 0.69
TRIM39Q9HCM9 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
TRIM39Q9HCM9 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC19.38■□□□□ 0.69
TRIM39Q9HCM9 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM39Q9HCM9 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM39Q9HCM9 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC19.37■□□□□ 0.69
TRIM39Q9HCM9 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM39Q9HCM9 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
TRIM39Q9HCM9 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
TRIM39Q9HCM9 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC19.37■□□□□ 0.69
TRIM39Q9HCM9 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM39Q9HCM9 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM39Q9HCM9 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC19.37■□□□□ 0.69
TRIM39Q9HCM9 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC19.37■□□□□ 0.69
TRIM39Q9HCM9 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC19.37■□□□□ 0.69
TRIM39Q9HCM9 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC19.37■□□□□ 0.69
TRIM39Q9HCM9 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC19.37■□□□□ 0.69
TRIM39Q9HCM9 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC19.37■□□□□ 0.69
TRIM39Q9HCM9 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
TRIM39Q9HCM9 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC19.37■□□□□ 0.69
TRIM39Q9HCM9 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM39Q9HCM9 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM39Q9HCM9 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC19.37■□□□□ 0.69
TRIM39Q9HCM9 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRIM39Q9HCM9 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC19.37■□□□□ 0.69
TRIM39Q9HCM9 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
TRIM39Q9HCM9 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM39Q9HCM9 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
TRIM39Q9HCM9 PCDHAC2-203ENST00000615316 3011 ntBASIC19.36■□□□□ 0.69
TRIM39Q9HCM9 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC19.36■□□□□ 0.69
TRIM39Q9HCM9 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM39Q9HCM9 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC19.36■□□□□ 0.69
TRIM39Q9HCM9 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC19.36■□□□□ 0.69
TRIM39Q9HCM9 AL353807.1-201ENST00000427475 662 ntBASIC19.36■□□□□ 0.69
TRIM39Q9HCM9 AC012618.2-201ENST00000428058 849 ntBASIC19.36■□□□□ 0.69
TRIM39Q9HCM9 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM39Q9HCM9 AC233702.5-201ENST00000584107 538 ntBASIC19.36■□□□□ 0.69
TRIM39Q9HCM9 AP001412.1-201ENST00000608405 714 ntBASIC19.36■□□□□ 0.69
TRIM39Q9HCM9 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM39Q9HCM9 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC19.36■□□□□ 0.69
TRIM39Q9HCM9 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM39Q9HCM9 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM39Q9HCM9 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRIM39Q9HCM9 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM39Q9HCM9 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM39Q9HCM9 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC19.35■□□□□ 0.69
TRIM39Q9HCM9 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM39Q9HCM9 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM39Q9HCM9 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM39Q9HCM9 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC19.35■□□□□ 0.69
TRIM39Q9HCM9 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC19.35■□□□□ 0.69
TRIM39Q9HCM9 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM39Q9HCM9 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC19.35■□□□□ 0.69
TRIM39Q9HCM9 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM39Q9HCM9 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM39Q9HCM9 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM39Q9HCM9 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
TRIM39Q9HCM9 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRIM39Q9HCM9 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.35■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms