Protein–RNA interactions for Protein: Q9HCK8

CHD8, Chromodomain-helicase-DNA-binding protein 8, humanhuman

Predictions only

Length 2,581 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD8Q9HCK8 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CHD8Q9HCK8 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CHD8Q9HCK8 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CHD8Q9HCK8 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC18.28■□□□□ 0.52
CHD8Q9HCK8 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC18.28■□□□□ 0.52
CHD8Q9HCK8 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CHD8Q9HCK8 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CHD8Q9HCK8 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CHD8Q9HCK8 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC18.28■□□□□ 0.52
CHD8Q9HCK8 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
CHD8Q9HCK8 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC18.28■□□□□ 0.52
CHD8Q9HCK8 AL031284.1-201ENST00000419297 478 ntBASIC18.28■□□□□ 0.52
CHD8Q9HCK8 WDR6-223ENST00000627177 207 ntTSL 2 BASIC18.28■□□□□ 0.52
CHD8Q9HCK8 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC18.28■□□□□ 0.52
CHD8Q9HCK8 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CHD8Q9HCK8 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CHD8Q9HCK8 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC18.27■□□□□ 0.52
CHD8Q9HCK8 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CHD8Q9HCK8 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CHD8Q9HCK8 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CHD8Q9HCK8 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC18.27■□□□□ 0.52
CHD8Q9HCK8 WBP2-203ENST00000433525 928 ntTSL 2 BASIC18.27■□□□□ 0.52
CHD8Q9HCK8 LINC01711-201ENST00000598340 967 ntBASIC18.27■□□□□ 0.52
CHD8Q9HCK8 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
CHD8Q9HCK8 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC18.27■□□□□ 0.52
CHD8Q9HCK8 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CHD8Q9HCK8 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CHD8Q9HCK8 AC011484.1-201ENST00000377652 1995 ntBASIC18.27■□□□□ 0.51
CHD8Q9HCK8 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
CHD8Q9HCK8 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC18.27■□□□□ 0.51
CHD8Q9HCK8 DRAXINP1-201ENST00000437611 948 ntBASIC18.27■□□□□ 0.51
CHD8Q9HCK8 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
CHD8Q9HCK8 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC18.27■□□□□ 0.51
CHD8Q9HCK8 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CHD8Q9HCK8 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC18.27■□□□□ 0.51
CHD8Q9HCK8 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
CHD8Q9HCK8 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC18.27■□□□□ 0.51
CHD8Q9HCK8 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHD8Q9HCK8 AC080038.3-201ENST00000623346 1952 ntBASIC18.26■□□□□ 0.51
CHD8Q9HCK8 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHD8Q9HCK8 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC18.26■□□□□ 0.51
CHD8Q9HCK8 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC18.26■□□□□ 0.51
CHD8Q9HCK8 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHD8Q9HCK8 PTPA-216ENST00000432651 857 ntTSL 2 BASIC18.26■□□□□ 0.51
CHD8Q9HCK8 MIR3197-201ENST00000582241 73 ntBASIC18.26■□□□□ 0.51
CHD8Q9HCK8 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC18.26■□□□□ 0.51
CHD8Q9HCK8 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHD8Q9HCK8 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
CHD8Q9HCK8 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHD8Q9HCK8 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
CHD8Q9HCK8 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHD8Q9HCK8 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHD8Q9HCK8 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CHD8Q9HCK8 FOSL1P1-201ENST00000511041 816 ntBASIC18.26■□□□□ 0.51
CHD8Q9HCK8 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC18.26■□□□□ 0.51
CHD8Q9HCK8 RPS15-207ENST00000591032 550 ntTSL 3 BASIC18.26■□□□□ 0.51
CHD8Q9HCK8 AC138894.3-201ENST00000603787 634 ntBASIC18.26■□□□□ 0.51
CHD8Q9HCK8 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC18.26■□□□□ 0.51
CHD8Q9HCK8 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHD8Q9HCK8 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CHD8Q9HCK8 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CHD8Q9HCK8 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC18.25■□□□□ 0.51
CHD8Q9HCK8 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CHD8Q9HCK8 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC18.25■□□□□ 0.51
CHD8Q9HCK8 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CHD8Q9HCK8 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC18.25■□□□□ 0.51
CHD8Q9HCK8 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC18.25■□□□□ 0.51
CHD8Q9HCK8 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CHD8Q9HCK8 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CHD8Q9HCK8 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CHD8Q9HCK8 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
CHD8Q9HCK8 AC010327.4-202ENST00000591484 748 ntBASIC18.25■□□□□ 0.51
CHD8Q9HCK8 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC18.25■□□□□ 0.51
CHD8Q9HCK8 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC18.25■□□□□ 0.51
CHD8Q9HCK8 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC18.25■□□□□ 0.51
CHD8Q9HCK8 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CHD8Q9HCK8 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC18.24■□□□□ 0.51
CHD8Q9HCK8 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC18.24■□□□□ 0.51
CHD8Q9HCK8 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CHD8Q9HCK8 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC18.24■□□□□ 0.51
CHD8Q9HCK8 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CHD8Q9HCK8 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC18.24■□□□□ 0.51
CHD8Q9HCK8 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC18.24■□□□□ 0.51
CHD8Q9HCK8 TSPY22P-201ENST00000427496 604 ntBASIC18.24■□□□□ 0.51
CHD8Q9HCK8 AC098831.1-202ENST00000438821 336 ntBASIC18.24■□□□□ 0.51
CHD8Q9HCK8 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC18.24■□□□□ 0.51
CHD8Q9HCK8 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC18.24■□□□□ 0.51
CHD8Q9HCK8 AL390719.2-201ENST00000606993 987 ntBASIC18.24■□□□□ 0.51
CHD8Q9HCK8 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC18.24■□□□□ 0.51
CHD8Q9HCK8 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CHD8Q9HCK8 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
CHD8Q9HCK8 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CHD8Q9HCK8 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC18.24■□□□□ 0.51
CHD8Q9HCK8 RNPS1P1-201ENST00000507437 918 ntBASIC18.24■□□□□ 0.51
CHD8Q9HCK8 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC18.24■□□□□ 0.51
CHD8Q9HCK8 HLA-A-209ENST00000638375 975 ntBASIC18.24■□□□□ 0.51
CHD8Q9HCK8 AC018553.1-201ENST00000616682 1458 ntBASIC18.23■□□□□ 0.51
CHD8Q9HCK8 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CHD8Q9HCK8 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CHD8Q9HCK8 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms