Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
TRIM4Q9C037 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM4Q9C037 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC19.42■□□□□ 0.7
TRIM4Q9C037 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC19.42■□□□□ 0.7
TRIM4Q9C037 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC19.42■□□□□ 0.7
TRIM4Q9C037 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM4Q9C037 AC069236.1-201ENST00000604339 616 ntBASIC19.42■□□□□ 0.7
TRIM4Q9C037 LINC01023-201ENST00000606054 436 ntBASIC19.42■□□□□ 0.7
TRIM4Q9C037 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC19.42■□□□□ 0.7
TRIM4Q9C037 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM4Q9C037 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM4Q9C037 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TRIM4Q9C037 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC19.42■□□□□ 0.7
TRIM4Q9C037 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC19.42■□□□□ 0.7
TRIM4Q9C037 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
TRIM4Q9C037 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM4Q9C037 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
TRIM4Q9C037 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
TRIM4Q9C037 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM4Q9C037 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM4Q9C037 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM4Q9C037 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC19.41■□□□□ 0.7
TRIM4Q9C037 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC19.41■□□□□ 0.7
TRIM4Q9C037 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
TRIM4Q9C037 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC19.41■□□□□ 0.7
TRIM4Q9C037 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM4Q9C037 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM4Q9C037 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM4Q9C037 SNORA78-201ENST00000459373 127 ntBASIC19.41■□□□□ 0.7
TRIM4Q9C037 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM4Q9C037 AC091874.3-201ENST00000512672 1195 ntBASIC19.41■□□□□ 0.7
TRIM4Q9C037 AP003097.1-201ENST00000530657 1135 ntBASIC19.41■□□□□ 0.7
TRIM4Q9C037 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC19.41■□□□□ 0.7
TRIM4Q9C037 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC19.41■□□□□ 0.7
TRIM4Q9C037 FAM197Y4-202ENST00000622692 608 ntBASIC19.41■□□□□ 0.7
TRIM4Q9C037 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC19.41■□□□□ 0.7
TRIM4Q9C037 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM4Q9C037 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TRIM4Q9C037 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC19.41■□□□□ 0.7
TRIM4Q9C037 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
TRIM4Q9C037 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC19.41■□□□□ 0.7
TRIM4Q9C037 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM4Q9C037 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM4Q9C037 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM4Q9C037 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
TRIM4Q9C037 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM4Q9C037 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
TRIM4Q9C037 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM4Q9C037 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM4Q9C037 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC19.4■□□□□ 0.7
TRIM4Q9C037 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC19.4■□□□□ 0.7
TRIM4Q9C037 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC19.4■□□□□ 0.7
TRIM4Q9C037 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
TRIM4Q9C037 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM4Q9C037 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM4Q9C037 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM4Q9C037 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC19.4■□□□□ 0.7
TRIM4Q9C037 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC19.4■□□□□ 0.7
TRIM4Q9C037 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
TRIM4Q9C037 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRIM4Q9C037 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.7
TRIM4Q9C037 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC19.39■□□□□ 0.69
TRIM4Q9C037 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM4Q9C037 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM4Q9C037 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM4Q9C037 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC19.39■□□□□ 0.69
TRIM4Q9C037 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC19.39■□□□□ 0.69
TRIM4Q9C037 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
TRIM4Q9C037 UNC93B5-201ENST00000530315 699 ntBASIC19.39■□□□□ 0.69
TRIM4Q9C037 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM4Q9C037 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC19.39■□□□□ 0.69
TRIM4Q9C037 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC19.39■□□□□ 0.69
TRIM4Q9C037 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM4Q9C037 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
TRIM4Q9C037 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM4Q9C037 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM4Q9C037 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC19.39■□□□□ 0.69
TRIM4Q9C037 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM4Q9C037 AC020907.5-201ENST00000624372 1936 ntBASIC19.39■□□□□ 0.69
TRIM4Q9C037 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM4Q9C037 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRIM4Q9C037 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM4Q9C037 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC19.38■□□□□ 0.69
TRIM4Q9C037 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM4Q9C037 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
TRIM4Q9C037 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM4Q9C037 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM4Q9C037 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM4Q9C037 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
TRIM4Q9C037 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM4Q9C037 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRIM4Q9C037 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
TRIM4Q9C037 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC19.38■□□□□ 0.69
TRIM4Q9C037 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC19.38■□□□□ 0.69
TRIM4Q9C037 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC19.38■□□□□ 0.69
TRIM4Q9C037 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC19.38■□□□□ 0.69
TRIM4Q9C037 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
TRIM4Q9C037 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
TRIM4Q9C037 FP700111.2-201ENST00000619190 1892 ntBASIC19.38■□□□□ 0.69
TRIM4Q9C037 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms