Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC28BQ9BUN5 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC18.99■□□□□ 0.63
CCDC28BQ9BUN5 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC28BQ9BUN5 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC28BQ9BUN5 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC28BQ9BUN5 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC18.99■□□□□ 0.63
CCDC28BQ9BUN5 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC28BQ9BUN5 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC18.99■□□□□ 0.63
CCDC28BQ9BUN5 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC28BQ9BUN5 KRT18P61-201ENST00000585825 1298 ntBASIC18.99■□□□□ 0.63
CCDC28BQ9BUN5 SP2-202ENST00000613139 908 ntTSL 5 BASIC18.99■□□□□ 0.63
CCDC28BQ9BUN5 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC28BQ9BUN5 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC28BQ9BUN5 AL161938.1-201ENST00000569833 2180 ntBASIC18.99■□□□□ 0.63
CCDC28BQ9BUN5 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC28BQ9BUN5 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC28BQ9BUN5 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC28BQ9BUN5 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC28BQ9BUN5 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC28BQ9BUN5 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC28BQ9BUN5 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC28BQ9BUN5 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC28BQ9BUN5 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC28BQ9BUN5 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC28BQ9BUN5 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC18.98■□□□□ 0.63
CCDC28BQ9BUN5 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
CCDC28BQ9BUN5 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
CCDC28BQ9BUN5 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC28BQ9BUN5 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
CCDC28BQ9BUN5 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC18.98■□□□□ 0.63
CCDC28BQ9BUN5 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC28BQ9BUN5 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC28BQ9BUN5 BRI3-207ENST00000539286 699 ntTSL 2 BASIC18.98■□□□□ 0.63
CCDC28BQ9BUN5 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC28BQ9BUN5 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
CCDC28BQ9BUN5 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC28BQ9BUN5 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC28BQ9BUN5 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC28BQ9BUN5 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC28BQ9BUN5 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC28BQ9BUN5 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC28BQ9BUN5 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC28BQ9BUN5 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC28BQ9BUN5 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC18.98■□□□□ 0.63
CCDC28BQ9BUN5 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC18.97■□□□□ 0.63
CCDC28BQ9BUN5 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
CCDC28BQ9BUN5 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC18.97■□□□□ 0.63
CCDC28BQ9BUN5 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
CCDC28BQ9BUN5 GCK-205ENST00000437084 1385 ntTSL 5 BASIC18.97■□□□□ 0.63
CCDC28BQ9BUN5 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC18.97■□□□□ 0.63
CCDC28BQ9BUN5 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC28BQ9BUN5 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC28BQ9BUN5 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC28BQ9BUN5 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC18.97■□□□□ 0.63
CCDC28BQ9BUN5 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC28BQ9BUN5 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC28BQ9BUN5 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC28BQ9BUN5 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC18.97■□□□□ 0.63
CCDC28BQ9BUN5 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC28BQ9BUN5 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC18.97■□□□□ 0.63
CCDC28BQ9BUN5 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC18.97■□□□□ 0.63
CCDC28BQ9BUN5 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC28BQ9BUN5 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC28BQ9BUN5 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC18.97■□□□□ 0.63
CCDC28BQ9BUN5 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC28BQ9BUN5 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC28BQ9BUN5 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC18.97■□□□□ 0.63
CCDC28BQ9BUN5 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC28BQ9BUN5 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
CCDC28BQ9BUN5 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC18.96■□□□□ 0.63
CCDC28BQ9BUN5 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
CCDC28BQ9BUN5 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC28BQ9BUN5 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC28BQ9BUN5 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC18.96■□□□□ 0.63
CCDC28BQ9BUN5 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC18.96■□□□□ 0.63
CCDC28BQ9BUN5 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
CCDC28BQ9BUN5 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC28BQ9BUN5 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC28BQ9BUN5 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
CCDC28BQ9BUN5 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC18.96■□□□□ 0.63
CCDC28BQ9BUN5 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC28BQ9BUN5 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC28BQ9BUN5 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC28BQ9BUN5 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC18.96■□□□□ 0.63
CCDC28BQ9BUN5 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC18.96■□□□□ 0.63
CCDC28BQ9BUN5 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC28BQ9BUN5 BMP1-204ENST00000397814 836 ntTSL 4 BASIC18.96■□□□□ 0.63
CCDC28BQ9BUN5 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC28BQ9BUN5 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC28BQ9BUN5 RARRES2P4-201ENST00000514074 484 ntBASIC18.96■□□□□ 0.63
CCDC28BQ9BUN5 AC023632.3-201ENST00000521633 145 ntBASIC18.96■□□□□ 0.63
CCDC28BQ9BUN5 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC18.96■□□□□ 0.63
CCDC28BQ9BUN5 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC28BQ9BUN5 AC013268.1-206ENST00000638368 961 ntBASIC18.96■□□□□ 0.63
CCDC28BQ9BUN5 AC112229.1-201ENST00000639295 961 ntBASIC18.96■□□□□ 0.63
CCDC28BQ9BUN5 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC28BQ9BUN5 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC18.96■□□□□ 0.63
CCDC28BQ9BUN5 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC28BQ9BUN5 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CCDC28BQ9BUN5 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms