Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC20.89■□□□□ 0.93
PAAF1Q9BRP4 USP39-204ENST00000409766 2033 ntTSL 2 BASIC20.89■□□□□ 0.93
PAAF1Q9BRP4 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
PAAF1Q9BRP4 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
PAAF1Q9BRP4 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
PAAF1Q9BRP4 PTPA-216ENST00000432651 857 ntTSL 2 BASIC20.89■□□□□ 0.93
PAAF1Q9BRP4 KRT18P57-201ENST00000443599 1254 ntBASIC20.89■□□□□ 0.93
PAAF1Q9BRP4 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC20.89■□□□□ 0.93
PAAF1Q9BRP4 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC20.89■□□□□ 0.93
PAAF1Q9BRP4 GRAMD4P8-201ENST00000605465 1115 ntBASIC20.89■□□□□ 0.93
PAAF1Q9BRP4 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC20.89■□□□□ 0.93
PAAF1Q9BRP4 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
PAAF1Q9BRP4 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC20.89■□□□□ 0.93
PAAF1Q9BRP4 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
PAAF1Q9BRP4 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC20.89■□□□□ 0.93
PAAF1Q9BRP4 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
PAAF1Q9BRP4 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC20.89■□□□□ 0.93
PAAF1Q9BRP4 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC20.88■□□□□ 0.93
PAAF1Q9BRP4 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC20.88■□□□□ 0.93
PAAF1Q9BRP4 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC20.88■□□□□ 0.93
PAAF1Q9BRP4 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
PAAF1Q9BRP4 KRT18P22-201ENST00000402024 1347 ntBASIC20.88■□□□□ 0.93
PAAF1Q9BRP4 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC20.88■□□□□ 0.93
PAAF1Q9BRP4 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PAAF1Q9BRP4 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
PAAF1Q9BRP4 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
PAAF1Q9BRP4 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PAAF1Q9BRP4 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PAAF1Q9BRP4 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC20.88■□□□□ 0.93
PAAF1Q9BRP4 AC113347.1-201ENST00000413321 391 ntBASIC20.88■□□□□ 0.93
PAAF1Q9BRP4 AC091390.4-202ENST00000476426 537 ntBASIC20.88■□□□□ 0.93
PAAF1Q9BRP4 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC20.88■□□□□ 0.93
PAAF1Q9BRP4 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
PAAF1Q9BRP4 SLC25A1P4-201ENST00000567977 778 ntBASIC20.88■□□□□ 0.93
PAAF1Q9BRP4 AP000692.2-201ENST00000608391 879 ntBASIC20.88■□□□□ 0.93
PAAF1Q9BRP4 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC20.88■□□□□ 0.93
PAAF1Q9BRP4 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC20.88■□□□□ 0.93
PAAF1Q9BRP4 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC20.88■□□□□ 0.93
PAAF1Q9BRP4 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PAAF1Q9BRP4 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PAAF1Q9BRP4 AC009237.14-201ENST00000609975 1594 ntBASIC20.88■□□□□ 0.93
PAAF1Q9BRP4 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
PAAF1Q9BRP4 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
PAAF1Q9BRP4 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
PAAF1Q9BRP4 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC20.87■□□□□ 0.93
PAAF1Q9BRP4 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PAAF1Q9BRP4 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
PAAF1Q9BRP4 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PAAF1Q9BRP4 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PAAF1Q9BRP4 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PAAF1Q9BRP4 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PAAF1Q9BRP4 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PAAF1Q9BRP4 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
PAAF1Q9BRP4 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
PAAF1Q9BRP4 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
PAAF1Q9BRP4 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
PAAF1Q9BRP4 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC20.87■□□□□ 0.93
PAAF1Q9BRP4 AC004951.3-201ENST00000418645 1148 ntBASIC20.87■□□□□ 0.93
PAAF1Q9BRP4 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC20.87■□□□□ 0.93
PAAF1Q9BRP4 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC20.87■□□□□ 0.93
PAAF1Q9BRP4 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC20.87■□□□□ 0.93
PAAF1Q9BRP4 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC20.87■□□□□ 0.93
PAAF1Q9BRP4 AC092865.7-201ENST00000641832 219 ntBASIC20.87■□□□□ 0.93
PAAF1Q9BRP4 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PAAF1Q9BRP4 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PAAF1Q9BRP4 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PAAF1Q9BRP4 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PAAF1Q9BRP4 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC20.87■□□□□ 0.93
PAAF1Q9BRP4 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PAAF1Q9BRP4 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PAAF1Q9BRP4 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PAAF1Q9BRP4 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC20.86■□□□□ 0.93
PAAF1Q9BRP4 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
PAAF1Q9BRP4 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC20.86■□□□□ 0.93
PAAF1Q9BRP4 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC20.86■□□□□ 0.93
PAAF1Q9BRP4 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
PAAF1Q9BRP4 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PAAF1Q9BRP4 TERF1P1-201ENST00000311003 1181 ntBASIC20.86■□□□□ 0.93
PAAF1Q9BRP4 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
PAAF1Q9BRP4 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
PAAF1Q9BRP4 SLC25A3P1-201ENST00000443844 931 ntBASIC20.86■□□□□ 0.93
PAAF1Q9BRP4 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
PAAF1Q9BRP4 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
PAAF1Q9BRP4 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC20.86■□□□□ 0.93
PAAF1Q9BRP4 AC073508.3-201ENST00000619697 1419 ntBASIC20.86■□□□□ 0.93
PAAF1Q9BRP4 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
PAAF1Q9BRP4 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
PAAF1Q9BRP4 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PAAF1Q9BRP4 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PAAF1Q9BRP4 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC20.85■□□□□ 0.93
PAAF1Q9BRP4 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PAAF1Q9BRP4 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC20.85■□□□□ 0.93
PAAF1Q9BRP4 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC20.85■□□□□ 0.93
PAAF1Q9BRP4 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
PAAF1Q9BRP4 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
PAAF1Q9BRP4 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
PAAF1Q9BRP4 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
PAAF1Q9BRP4 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
PAAF1Q9BRP4 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC20.85■□□□□ 0.93
PAAF1Q9BRP4 ECEL1P2-202ENST00000465689 757 ntBASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms