Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC106795.1-205ENST00000512851 1056 ntBASIC19.41■□□□□ 0.7
VPS13AQ96RL7 LINC02084-201ENST00000606069 1096 ntBASIC19.41■□□□□ 0.7
VPS13AQ96RL7 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VPS13AQ96RL7 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC19.41■□□□□ 0.7
VPS13AQ96RL7 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC19.4■□□□□ 0.7
VPS13AQ96RL7 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC19.4■□□□□ 0.7
VPS13AQ96RL7 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VPS13AQ96RL7 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC19.4■□□□□ 0.7
VPS13AQ96RL7 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS13AQ96RL7 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC19.4■□□□□ 0.7
VPS13AQ96RL7 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS13AQ96RL7 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS13AQ96RL7 AL353719.1-201ENST00000566847 864 ntBASIC19.4■□□□□ 0.7
VPS13AQ96RL7 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC19.4■□□□□ 0.7
VPS13AQ96RL7 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
VPS13AQ96RL7 AC140113.3-201ENST00000605663 199 ntBASIC19.4■□□□□ 0.7
VPS13AQ96RL7 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
VPS13AQ96RL7 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC19.4■□□□□ 0.7
VPS13AQ96RL7 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS13AQ96RL7 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS13AQ96RL7 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS13AQ96RL7 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VPS13AQ96RL7 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC19.39■□□□□ 0.7
VPS13AQ96RL7 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.7
VPS13AQ96RL7 STARP1-201ENST00000397973 869 ntBASIC19.39■□□□□ 0.69
VPS13AQ96RL7 AP002383.4-201ENST00000442518 975 ntBASIC19.39■□□□□ 0.69
VPS13AQ96RL7 AC079781.3-201ENST00000449110 356 ntBASIC19.39■□□□□ 0.69
VPS13AQ96RL7 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC19.39■□□□□ 0.69
VPS13AQ96RL7 NEK4P2-201ENST00000580004 1012 ntBASIC19.39■□□□□ 0.69
VPS13AQ96RL7 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
VPS13AQ96RL7 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC19.39■□□□□ 0.69
VPS13AQ96RL7 AC011298.2-201ENST00000617989 482 ntBASIC19.39■□□□□ 0.69
VPS13AQ96RL7 NME4-212ENST00000621774 904 ntTSL 3 BASIC19.39■□□□□ 0.69
VPS13AQ96RL7 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC19.39■□□□□ 0.69
VPS13AQ96RL7 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VPS13AQ96RL7 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS13AQ96RL7 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS13AQ96RL7 KRT18P13-201ENST00000400056 1290 ntBASIC19.39■□□□□ 0.69
VPS13AQ96RL7 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC19.39■□□□□ 0.69
VPS13AQ96RL7 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VPS13AQ96RL7 AC120114.3-201ENST00000611923 658 ntBASIC19.39■□□□□ 0.69
VPS13AQ96RL7 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
VPS13AQ96RL7 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VPS13AQ96RL7 AC018553.1-201ENST00000616682 1458 ntBASIC19.39■□□□□ 0.69
VPS13AQ96RL7 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC19.39■□□□□ 0.69
VPS13AQ96RL7 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC19.39■□□□□ 0.69
VPS13AQ96RL7 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS13AQ96RL7 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS13AQ96RL7 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS13AQ96RL7 CALM3-202ENST00000391918 702 ntTSL 2 BASIC19.38■□□□□ 0.69
VPS13AQ96RL7 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC19.38■□□□□ 0.69
VPS13AQ96RL7 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC19.38■□□□□ 0.69
VPS13AQ96RL7 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC19.38■□□□□ 0.69
VPS13AQ96RL7 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC19.38■□□□□ 0.69
VPS13AQ96RL7 KRT18P1-202ENST00000452408 1331 ntBASIC19.38■□□□□ 0.69
VPS13AQ96RL7 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC19.38■□□□□ 0.69
VPS13AQ96RL7 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS13AQ96RL7 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
VPS13AQ96RL7 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS13AQ96RL7 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS13AQ96RL7 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
VPS13AQ96RL7 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
VPS13AQ96RL7 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC19.38■□□□□ 0.69
VPS13AQ96RL7 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS13AQ96RL7 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS13AQ96RL7 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
VPS13AQ96RL7 EP400NL-214ENST00000641289 2402 ntBASIC19.38■□□□□ 0.69
VPS13AQ96RL7 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
VPS13AQ96RL7 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC19.38■□□□□ 0.69
VPS13AQ96RL7 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
VPS13AQ96RL7 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
VPS13AQ96RL7 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC19.38■□□□□ 0.69
VPS13AQ96RL7 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS13AQ96RL7 PMS2P1-201ENST00000431037 1228 ntBASIC19.38■□□□□ 0.69
VPS13AQ96RL7 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC19.38■□□□□ 0.69
VPS13AQ96RL7 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC19.38■□□□□ 0.69
VPS13AQ96RL7 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
VPS13AQ96RL7 HLA-A-201ENST00000376802 1334 ntBASIC19.38■□□□□ 0.69
VPS13AQ96RL7 AC022898.2-201ENST00000616822 1312 ntBASIC19.38■□□□□ 0.69
VPS13AQ96RL7 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS13AQ96RL7 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS13AQ96RL7 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
VPS13AQ96RL7 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
VPS13AQ96RL7 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS13AQ96RL7 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS13AQ96RL7 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC19.37■□□□□ 0.69
VPS13AQ96RL7 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC19.37■□□□□ 0.69
VPS13AQ96RL7 NT5C-210ENST00000582160 860 ntTSL 2 BASIC19.37■□□□□ 0.69
VPS13AQ96RL7 TFP1-202ENST00000475455 1573 ntBASIC19.37■□□□□ 0.69
VPS13AQ96RL7 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC19.37■□□□□ 0.69
VPS13AQ96RL7 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS13AQ96RL7 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC19.37■□□□□ 0.69
VPS13AQ96RL7 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC19.37■□□□□ 0.69
VPS13AQ96RL7 WWC2-AS2-201ENST00000578387 2183 ntBASIC19.37■□□□□ 0.69
VPS13AQ96RL7 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
VPS13AQ96RL7 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC19.37■□□□□ 0.69
VPS13AQ96RL7 AL662844.1-201ENST00000546340 181 ntBASIC19.37■□□□□ 0.69
VPS13AQ96RL7 FGF14-AS2-201ENST00000606448 1074 ntBASIC19.37■□□□□ 0.69
VPS13AQ96RL7 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC19.37■□□□□ 0.69
VPS13AQ96RL7 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms