Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
SKA3Q8IX90 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SKA3Q8IX90 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
SKA3Q8IX90 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
SKA3Q8IX90 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
SKA3Q8IX90 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SKA3Q8IX90 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SKA3Q8IX90 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SKA3Q8IX90 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SKA3Q8IX90 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SKA3Q8IX90 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SKA3Q8IX90 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
SKA3Q8IX90 AC026471.1-201ENST00000564629 3026 ntBASIC17.28■□□□□ 0.36
SKA3Q8IX90 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
SKA3Q8IX90 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
SKA3Q8IX90 AC125437.2-201ENST00000625180 2167 ntBASIC17.28■□□□□ 0.36
SKA3Q8IX90 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC17.28■□□□□ 0.36
SKA3Q8IX90 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SKA3Q8IX90 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC17.27■□□□□ 0.36
SKA3Q8IX90 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SKA3Q8IX90 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC17.27■□□□□ 0.36
SKA3Q8IX90 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
SKA3Q8IX90 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SKA3Q8IX90 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
SKA3Q8IX90 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC17.27■□□□□ 0.36
SKA3Q8IX90 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SKA3Q8IX90 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SKA3Q8IX90 POU5F1P3-201ENST00000428824 1078 ntBASIC17.27■□□□□ 0.36
SKA3Q8IX90 TSPY20P-201ENST00000450910 630 ntBASIC17.27■□□□□ 0.36
SKA3Q8IX90 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC17.27■□□□□ 0.36
SKA3Q8IX90 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC17.27■□□□□ 0.36
SKA3Q8IX90 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC17.27■□□□□ 0.36
SKA3Q8IX90 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC17.27■□□□□ 0.36
SKA3Q8IX90 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC17.27■□□□□ 0.36
SKA3Q8IX90 AC233263.1-201ENST00000578059 224 ntBASIC17.27■□□□□ 0.36
SKA3Q8IX90 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC17.27■□□□□ 0.36
SKA3Q8IX90 AC006058.3-201ENST00000606217 1069 ntBASIC17.27■□□□□ 0.36
SKA3Q8IX90 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SKA3Q8IX90 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
SKA3Q8IX90 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
SKA3Q8IX90 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
SKA3Q8IX90 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SKA3Q8IX90 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SKA3Q8IX90 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC17.27■□□□□ 0.35
SKA3Q8IX90 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC17.27■□□□□ 0.35
SKA3Q8IX90 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SKA3Q8IX90 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC17.27■□□□□ 0.35
SKA3Q8IX90 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC17.27■□□□□ 0.35
SKA3Q8IX90 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC17.27■□□□□ 0.35
SKA3Q8IX90 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SKA3Q8IX90 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SKA3Q8IX90 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC17.26■□□□□ 0.35
SKA3Q8IX90 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SKA3Q8IX90 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SKA3Q8IX90 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC17.26■□□□□ 0.35
SKA3Q8IX90 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SKA3Q8IX90 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
SKA3Q8IX90 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
SKA3Q8IX90 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC17.26■□□□□ 0.35
SKA3Q8IX90 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
SKA3Q8IX90 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SKA3Q8IX90 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SKA3Q8IX90 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SKA3Q8IX90 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC17.26■□□□□ 0.35
SKA3Q8IX90 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SKA3Q8IX90 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SKA3Q8IX90 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC17.26■□□□□ 0.35
SKA3Q8IX90 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC17.26■□□□□ 0.35
SKA3Q8IX90 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC17.26■□□□□ 0.35
SKA3Q8IX90 AC069544.1-201ENST00000609399 999 ntBASIC17.26■□□□□ 0.35
SKA3Q8IX90 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SKA3Q8IX90 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
SKA3Q8IX90 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC17.26■□□□□ 0.35
SKA3Q8IX90 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC17.26■□□□□ 0.35
SKA3Q8IX90 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
SKA3Q8IX90 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SKA3Q8IX90 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
SKA3Q8IX90 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SKA3Q8IX90 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SKA3Q8IX90 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SKA3Q8IX90 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC17.26■□□□□ 0.35
SKA3Q8IX90 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SKA3Q8IX90 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC17.25■□□□□ 0.35
SKA3Q8IX90 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SKA3Q8IX90 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SKA3Q8IX90 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SKA3Q8IX90 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
SKA3Q8IX90 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
SKA3Q8IX90 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
SKA3Q8IX90 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SKA3Q8IX90 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
SKA3Q8IX90 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC17.25■□□□□ 0.35
SKA3Q8IX90 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC17.25■□□□□ 0.35
SKA3Q8IX90 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SKA3Q8IX90 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC17.25■□□□□ 0.35
SKA3Q8IX90 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SKA3Q8IX90 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC17.25■□□□□ 0.35
SKA3Q8IX90 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SKA3Q8IX90 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SKA3Q8IX90 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms