Protein–RNA interactions for Protein: Q59EK9

RUNDC3A, RUN domain-containing protein 3A, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RUNDC3AQ59EK9 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.54
RUNDC3AQ59EK9 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC18.46■□□□□ 0.54
RUNDC3AQ59EK9 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
RUNDC3AQ59EK9 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RUNDC3AQ59EK9 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC18.45■□□□□ 0.54
RUNDC3AQ59EK9 AL161938.1-201ENST00000569833 2180 ntBASIC18.45■□□□□ 0.54
RUNDC3AQ59EK9 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
RUNDC3AQ59EK9 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RUNDC3AQ59EK9 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
RUNDC3AQ59EK9 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
RUNDC3AQ59EK9 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC18.45■□□□□ 0.54
RUNDC3AQ59EK9 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RUNDC3AQ59EK9 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RUNDC3AQ59EK9 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
RUNDC3AQ59EK9 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC18.45■□□□□ 0.54
RUNDC3AQ59EK9 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC18.45■□□□□ 0.54
RUNDC3AQ59EK9 HES2-205ENST00000487437 968 ntTSL 3 BASIC18.45■□□□□ 0.54
RUNDC3AQ59EK9 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC18.45■□□□□ 0.54
RUNDC3AQ59EK9 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
RUNDC3AQ59EK9 AC231657.2-201ENST00000624556 255 ntBASIC18.45■□□□□ 0.54
RUNDC3AQ59EK9 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC18.45■□□□□ 0.54
RUNDC3AQ59EK9 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC18.45■□□□□ 0.54
RUNDC3AQ59EK9 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RUNDC3AQ59EK9 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC18.45■□□□□ 0.54
RUNDC3AQ59EK9 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
RUNDC3AQ59EK9 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC18.45■□□□□ 0.54
RUNDC3AQ59EK9 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RUNDC3AQ59EK9 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
RUNDC3AQ59EK9 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RUNDC3AQ59EK9 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
RUNDC3AQ59EK9 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC18.45■□□□□ 0.54
RUNDC3AQ59EK9 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
RUNDC3AQ59EK9 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RUNDC3AQ59EK9 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC18.44■□□□□ 0.54
RUNDC3AQ59EK9 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
RUNDC3AQ59EK9 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
RUNDC3AQ59EK9 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
RUNDC3AQ59EK9 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
RUNDC3AQ59EK9 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
RUNDC3AQ59EK9 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
RUNDC3AQ59EK9 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
RUNDC3AQ59EK9 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC18.44■□□□□ 0.54
RUNDC3AQ59EK9 BID-214ENST00000617586 542 ntTSL 5 BASIC18.44■□□□□ 0.54
RUNDC3AQ59EK9 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC18.44■□□□□ 0.54
RUNDC3AQ59EK9 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
RUNDC3AQ59EK9 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC18.44■□□□□ 0.54
RUNDC3AQ59EK9 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
RUNDC3AQ59EK9 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
RUNDC3AQ59EK9 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
RUNDC3AQ59EK9 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC18.43■□□□□ 0.54
RUNDC3AQ59EK9 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
RUNDC3AQ59EK9 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
RUNDC3AQ59EK9 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
RUNDC3AQ59EK9 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
RUNDC3AQ59EK9 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
RUNDC3AQ59EK9 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
RUNDC3AQ59EK9 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC18.43■□□□□ 0.54
RUNDC3AQ59EK9 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
RUNDC3AQ59EK9 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC18.43■□□□□ 0.54
RUNDC3AQ59EK9 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
RUNDC3AQ59EK9 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC18.43■□□□□ 0.54
RUNDC3AQ59EK9 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC18.43■□□□□ 0.54
RUNDC3AQ59EK9 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
RUNDC3AQ59EK9 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
RUNDC3AQ59EK9 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
RUNDC3AQ59EK9 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
RUNDC3AQ59EK9 AL512625.2-201ENST00000417533 625 ntBASIC18.43■□□□□ 0.54
RUNDC3AQ59EK9 AC007322.1-201ENST00000426983 750 ntBASIC18.43■□□□□ 0.54
RUNDC3AQ59EK9 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC18.43■□□□□ 0.54
RUNDC3AQ59EK9 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC18.43■□□□□ 0.54
RUNDC3AQ59EK9 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC18.43■□□□□ 0.54
RUNDC3AQ59EK9 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC18.43■□□□□ 0.54
RUNDC3AQ59EK9 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
RUNDC3AQ59EK9 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC18.43■□□□□ 0.54
RUNDC3AQ59EK9 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
RUNDC3AQ59EK9 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC18.43■□□□□ 0.54
RUNDC3AQ59EK9 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
RUNDC3AQ59EK9 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC18.43■□□□□ 0.54
RUNDC3AQ59EK9 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
RUNDC3AQ59EK9 NEFHP1-201ENST00000412845 2629 ntBASIC18.43■□□□□ 0.54
RUNDC3AQ59EK9 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC18.43■□□□□ 0.54
RUNDC3AQ59EK9 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
RUNDC3AQ59EK9 MOK-233ENST00000524214 1539 ntTSL 2 BASIC18.43■□□□□ 0.54
RUNDC3AQ59EK9 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
RUNDC3AQ59EK9 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC18.43■□□□□ 0.54
RUNDC3AQ59EK9 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
RUNDC3AQ59EK9 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
RUNDC3AQ59EK9 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
RUNDC3AQ59EK9 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC18.42■□□□□ 0.54
RUNDC3AQ59EK9 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
RUNDC3AQ59EK9 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
RUNDC3AQ59EK9 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC18.42■□□□□ 0.54
RUNDC3AQ59EK9 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RUNDC3AQ59EK9 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RUNDC3AQ59EK9 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RUNDC3AQ59EK9 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
RUNDC3AQ59EK9 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
RUNDC3AQ59EK9 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC18.42■□□□□ 0.54
RUNDC3AQ59EK9 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC18.42■□□□□ 0.54
RUNDC3AQ59EK9 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC18.42■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms