Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC18.37■□□□□ 0.53
SOX3P41225 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SOX3P41225 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SOX3P41225 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
SOX3P41225 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC18.37■□□□□ 0.53
SOX3P41225 AL023875.1-201ENST00000640777 796 ntBASIC18.37■□□□□ 0.53
SOX3P41225 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SOX3P41225 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SOX3P41225 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
SOX3P41225 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
SOX3P41225 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC18.37■□□□□ 0.53
SOX3P41225 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
SOX3P41225 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SOX3P41225 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
SOX3P41225 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
SOX3P41225 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
SOX3P41225 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SOX3P41225 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SOX3P41225 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
SOX3P41225 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SOX3P41225 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
SOX3P41225 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SOX3P41225 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SOX3P41225 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC18.36■□□□□ 0.53
SOX3P41225 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC18.36■□□□□ 0.53
SOX3P41225 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SOX3P41225 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
SOX3P41225 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC18.36■□□□□ 0.53
SOX3P41225 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
SOX3P41225 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC18.36■□□□□ 0.53
SOX3P41225 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SOX3P41225 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC18.36■□□□□ 0.53
SOX3P41225 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC18.36■□□□□ 0.53
SOX3P41225 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
SOX3P41225 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
SOX3P41225 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC18.36■□□□□ 0.53
SOX3P41225 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
SOX3P41225 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
SOX3P41225 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
SOX3P41225 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SOX3P41225 AL158211.5-201ENST00000623583 2518 ntBASIC18.35■□□□□ 0.53
SOX3P41225 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
SOX3P41225 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC18.35■□□□□ 0.53
SOX3P41225 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
SOX3P41225 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SOX3P41225 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
SOX3P41225 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SOX3P41225 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SOX3P41225 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC18.35■□□□□ 0.53
SOX3P41225 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC18.35■□□□□ 0.53
SOX3P41225 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC18.35■□□□□ 0.53
SOX3P41225 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
SOX3P41225 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC18.35■□□□□ 0.53
SOX3P41225 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC18.35■□□□□ 0.53
SOX3P41225 ISG20-202ENST00000379224 540 ntTSL 3 BASIC18.35■□□□□ 0.53
SOX3P41225 AC239809.2-201ENST00000415381 517 ntBASIC18.35■□□□□ 0.53
SOX3P41225 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
SOX3P41225 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
SOX3P41225 AC093827.2-201ENST00000512654 315 ntBASIC18.35■□□□□ 0.53
SOX3P41225 LY6E-205ENST00000519611 635 ntTSL 3 BASIC18.35■□□□□ 0.53
SOX3P41225 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC18.35■□□□□ 0.53
SOX3P41225 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC18.35■□□□□ 0.53
SOX3P41225 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC18.35■□□□□ 0.53
SOX3P41225 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC18.35■□□□□ 0.53
SOX3P41225 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC18.35■□□□□ 0.53
SOX3P41225 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC18.35■□□□□ 0.53
SOX3P41225 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SOX3P41225 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC18.35■□□□□ 0.53
SOX3P41225 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SOX3P41225 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SOX3P41225 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SOX3P41225 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
SOX3P41225 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
SOX3P41225 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SOX3P41225 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC18.35■□□□□ 0.53
SOX3P41225 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
SOX3P41225 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SOX3P41225 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
SOX3P41225 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SOX3P41225 BX323043.1-201ENST00000641006 1765 ntBASIC18.35■□□□□ 0.53
SOX3P41225 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
SOX3P41225 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SOX3P41225 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SOX3P41225 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC18.34■□□□□ 0.53
SOX3P41225 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SOX3P41225 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SOX3P41225 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
SOX3P41225 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC18.34■□□□□ 0.53
SOX3P41225 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC18.34■□□□□ 0.53
SOX3P41225 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
SOX3P41225 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SOX3P41225 BAALC-201ENST00000297574 801 ntTSL 3 BASIC18.34■□□□□ 0.53
SOX3P41225 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SOX3P41225 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC18.34■□□□□ 0.53
SOX3P41225 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC18.34■□□□□ 0.53
SOX3P41225 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC18.34■□□□□ 0.53
SOX3P41225 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC18.34■□□□□ 0.53
SOX3P41225 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC18.34■□□□□ 0.53
SOX3P41225 RHOD-202ENST00000532559 538 ntTSL 3 BASIC18.34■□□□□ 0.53
SOX3P41225 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms