Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
RTN3O95197 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RTN3O95197 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
RTN3O95197 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
RTN3O95197 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RTN3O95197 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC20.6■□□□□ 0.89
RTN3O95197 SRI-203ENST00000419179 1307 ntTSL 2 BASIC20.6■□□□□ 0.89
RTN3O95197 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RTN3O95197 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC20.6■□□□□ 0.89
RTN3O95197 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RTN3O95197 FAM197Y1-201ENST00000421178 764 ntBASIC20.6■□□□□ 0.89
RTN3O95197 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC20.6■□□□□ 0.89
RTN3O95197 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
RTN3O95197 GRAP-204ENST00000573099 846 ntTSL 3 BASIC20.6■□□□□ 0.89
RTN3O95197 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RTN3O95197 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
RTN3O95197 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC20.6■□□□□ 0.89
RTN3O95197 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
RTN3O95197 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC20.6■□□□□ 0.89
RTN3O95197 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RTN3O95197 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC20.6■□□□□ 0.89
RTN3O95197 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC20.6■□□□□ 0.89
RTN3O95197 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
RTN3O95197 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
RTN3O95197 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
RTN3O95197 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
RTN3O95197 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC20.59■□□□□ 0.89
RTN3O95197 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
RTN3O95197 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RTN3O95197 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC20.59■□□□□ 0.89
RTN3O95197 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
RTN3O95197 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RTN3O95197 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RTN3O95197 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC20.59■□□□□ 0.89
RTN3O95197 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RTN3O95197 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC20.59■□□□□ 0.89
RTN3O95197 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
RTN3O95197 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RTN3O95197 AL355355.2-201ENST00000442321 338 ntBASIC20.59■□□□□ 0.89
RTN3O95197 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC20.59■□□□□ 0.89
RTN3O95197 AC026471.5-201ENST00000615068 467 ntBASIC20.59■□□□□ 0.89
RTN3O95197 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RTN3O95197 TMEM179-206ENST00000616017 1645 ntBASIC20.59■□□□□ 0.89
RTN3O95197 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
RTN3O95197 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RTN3O95197 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
RTN3O95197 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC20.59■□□□□ 0.89
RTN3O95197 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RTN3O95197 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC20.59■□□□□ 0.89
RTN3O95197 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
RTN3O95197 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
RTN3O95197 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
RTN3O95197 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
RTN3O95197 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC20.58■□□□□ 0.89
RTN3O95197 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC20.58■□□□□ 0.89
RTN3O95197 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC20.58■□□□□ 0.89
RTN3O95197 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
RTN3O95197 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC20.58■□□□□ 0.89
RTN3O95197 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC20.58■□□□□ 0.89
RTN3O95197 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC20.58■□□□□ 0.89
RTN3O95197 AC009237.14-201ENST00000609975 1594 ntBASIC20.58■□□□□ 0.88
RTN3O95197 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.88
RTN3O95197 AL691432.2-201ENST00000607222 2038 ntBASIC20.58■□□□□ 0.88
RTN3O95197 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
RTN3O95197 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
RTN3O95197 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC20.58■□□□□ 0.88
RTN3O95197 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC20.57■□□□□ 0.88
RTN3O95197 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC20.57■□□□□ 0.88
RTN3O95197 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RTN3O95197 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
RTN3O95197 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
RTN3O95197 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RTN3O95197 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
RTN3O95197 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
RTN3O95197 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RTN3O95197 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC20.57■□□□□ 0.88
RTN3O95197 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
RTN3O95197 KRT16P1-201ENST00000399124 1418 ntBASIC20.57■□□□□ 0.88
RTN3O95197 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RTN3O95197 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC20.57■□□□□ 0.88
RTN3O95197 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC20.57■□□□□ 0.88
RTN3O95197 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC20.57■□□□□ 0.88
RTN3O95197 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
RTN3O95197 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC20.57■□□□□ 0.88
RTN3O95197 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RTN3O95197 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
RTN3O95197 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
RTN3O95197 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
RTN3O95197 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
RTN3O95197 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RTN3O95197 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RTN3O95197 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RTN3O95197 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
RTN3O95197 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC20.56■□□□□ 0.88
RTN3O95197 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC20.56■□□□□ 0.88
RTN3O95197 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
RTN3O95197 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
RTN3O95197 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC20.56■□□□□ 0.88
RTN3O95197 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
RTN3O95197 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms