Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 AL121829.2-201ENST00000620908 328 ntBASIC18.72■□□□□ 0.59
SEMA3DO95025 PWWP2AP1-201ENST00000429776 2273 ntBASIC18.72■□□□□ 0.59
SEMA3DO95025 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SEMA3DO95025 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SEMA3DO95025 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SEMA3DO95025 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC18.72■□□□□ 0.59
SEMA3DO95025 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SEMA3DO95025 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SEMA3DO95025 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SEMA3DO95025 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
SEMA3DO95025 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SEMA3DO95025 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC18.71■□□□□ 0.59
SEMA3DO95025 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SEMA3DO95025 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
SEMA3DO95025 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
SEMA3DO95025 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SEMA3DO95025 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC18.71■□□□□ 0.59
SEMA3DO95025 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SEMA3DO95025 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SEMA3DO95025 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SEMA3DO95025 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SEMA3DO95025 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SEMA3DO95025 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC18.71■□□□□ 0.59
SEMA3DO95025 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC18.71■□□□□ 0.59
SEMA3DO95025 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC18.71■□□□□ 0.59
SEMA3DO95025 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC18.71■□□□□ 0.59
SEMA3DO95025 UNC93B4-201ENST00000505679 747 ntBASIC18.71■□□□□ 0.59
SEMA3DO95025 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC18.71■□□□□ 0.59
SEMA3DO95025 UNC93B5-201ENST00000530315 699 ntBASIC18.71■□□□□ 0.59
SEMA3DO95025 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC18.71■□□□□ 0.59
SEMA3DO95025 KLF13-207ENST00000560473 489 ntTSL 3 BASIC18.71■□□□□ 0.59
SEMA3DO95025 KLF2-202ENST00000592003 564 ntTSL 3 BASIC18.71■□□□□ 0.59
SEMA3DO95025 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
SEMA3DO95025 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
SEMA3DO95025 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC18.71■□□□□ 0.59
SEMA3DO95025 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
SEMA3DO95025 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SEMA3DO95025 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SEMA3DO95025 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC18.71■□□□□ 0.59
SEMA3DO95025 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
SEMA3DO95025 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
SEMA3DO95025 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SEMA3DO95025 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
SEMA3DO95025 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SEMA3DO95025 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC18.7■□□□□ 0.58
SEMA3DO95025 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
SEMA3DO95025 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
SEMA3DO95025 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SEMA3DO95025 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC18.7■□□□□ 0.58
SEMA3DO95025 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC18.7■□□□□ 0.58
SEMA3DO95025 APTR-205ENST00000447009 902 ntTSL 2 BASIC18.7■□□□□ 0.58
SEMA3DO95025 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC18.7■□□□□ 0.58
SEMA3DO95025 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC18.7■□□□□ 0.58
SEMA3DO95025 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC18.7■□□□□ 0.58
SEMA3DO95025 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
SEMA3DO95025 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
SEMA3DO95025 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
SEMA3DO95025 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC18.7■□□□□ 0.58
SEMA3DO95025 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SEMA3DO95025 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC18.7■□□□□ 0.58
SEMA3DO95025 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
SEMA3DO95025 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SEMA3DO95025 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SEMA3DO95025 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SEMA3DO95025 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
SEMA3DO95025 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SEMA3DO95025 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SEMA3DO95025 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SEMA3DO95025 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SEMA3DO95025 TREX2-204ENST00000370212 861 ntTSL 5 BASIC18.69■□□□□ 0.58
SEMA3DO95025 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
SEMA3DO95025 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
SEMA3DO95025 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SEMA3DO95025 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC18.69■□□□□ 0.58
SEMA3DO95025 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SEMA3DO95025 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
SEMA3DO95025 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SEMA3DO95025 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
SEMA3DO95025 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SEMA3DO95025 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
SEMA3DO95025 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC18.69■□□□□ 0.58
SEMA3DO95025 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
SEMA3DO95025 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SEMA3DO95025 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SEMA3DO95025 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
SEMA3DO95025 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SEMA3DO95025 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
SEMA3DO95025 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SEMA3DO95025 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
SEMA3DO95025 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SEMA3DO95025 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SEMA3DO95025 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
SEMA3DO95025 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SEMA3DO95025 YBX1P10-201ENST00000444752 975 ntBASIC18.68■□□□□ 0.58
SEMA3DO95025 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
SEMA3DO95025 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC18.68■□□□□ 0.58
SEMA3DO95025 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC18.68■□□□□ 0.58
SEMA3DO95025 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
SEMA3DO95025 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SEMA3DO95025 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 105.1 ms