Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HMGN4O00479 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
HMGN4O00479 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC18.19■□□□□ 0.5
HMGN4O00479 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
HMGN4O00479 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC18.19■□□□□ 0.5
HMGN4O00479 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
HMGN4O00479 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HMGN4O00479 AL020996.1-203ENST00000536896 2307 ntBASIC18.18■□□□□ 0.5
HMGN4O00479 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
HMGN4O00479 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HMGN4O00479 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
HMGN4O00479 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HMGN4O00479 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
HMGN4O00479 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC18.18■□□□□ 0.5
HMGN4O00479 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HMGN4O00479 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC18.18■□□□□ 0.5
HMGN4O00479 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HMGN4O00479 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HMGN4O00479 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HMGN4O00479 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
HMGN4O00479 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC18.18■□□□□ 0.5
HMGN4O00479 PNMA6B-201ENST00000538162 1200 ntBASIC18.18■□□□□ 0.5
HMGN4O00479 REXO2-208ENST00000539754 791 ntTSL 2 BASIC18.18■□□□□ 0.5
HMGN4O00479 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC18.18■□□□□ 0.5
HMGN4O00479 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC18.18■□□□□ 0.5
HMGN4O00479 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HMGN4O00479 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
HMGN4O00479 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HMGN4O00479 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HMGN4O00479 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
HMGN4O00479 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC18.17■□□□□ 0.5
HMGN4O00479 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
HMGN4O00479 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC18.17■□□□□ 0.5
HMGN4O00479 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC18.17■□□□□ 0.5
HMGN4O00479 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
HMGN4O00479 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC18.17■□□□□ 0.5
HMGN4O00479 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HMGN4O00479 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
HMGN4O00479 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
HMGN4O00479 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC18.17■□□□□ 0.5
HMGN4O00479 MAX-217ENST00000557277 728 ntTSL 3 BASIC18.17■□□□□ 0.5
HMGN4O00479 AC060766.5-201ENST00000590539 871 ntBASIC18.17■□□□□ 0.5
HMGN4O00479 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HMGN4O00479 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
HMGN4O00479 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HMGN4O00479 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC18.17■□□□□ 0.5
HMGN4O00479 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HMGN4O00479 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HMGN4O00479 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
HMGN4O00479 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
HMGN4O00479 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
HMGN4O00479 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
HMGN4O00479 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC18.16■□□□□ 0.5
HMGN4O00479 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HMGN4O00479 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HMGN4O00479 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HMGN4O00479 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
HMGN4O00479 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HMGN4O00479 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HMGN4O00479 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
HMGN4O00479 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
HMGN4O00479 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC18.16■□□□□ 0.5
HMGN4O00479 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC18.16■□□□□ 0.5
HMGN4O00479 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC18.16■□□□□ 0.5
HMGN4O00479 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC18.16■□□□□ 0.5
HMGN4O00479 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC18.16■□□□□ 0.5
HMGN4O00479 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC18.16■□□□□ 0.5
HMGN4O00479 AL109923.1-201ENST00000618799 583 ntBASIC18.16■□□□□ 0.5
HMGN4O00479 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
HMGN4O00479 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
HMGN4O00479 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
HMGN4O00479 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HMGN4O00479 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HMGN4O00479 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC18.16■□□□□ 0.5
HMGN4O00479 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HMGN4O00479 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
HMGN4O00479 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HMGN4O00479 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGN4O00479 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
HMGN4O00479 GOLGA6L3-201ENST00000507199 1679 ntBASIC18.15■□□□□ 0.5
HMGN4O00479 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HMGN4O00479 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGN4O00479 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
HMGN4O00479 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC18.15■□□□□ 0.5
HMGN4O00479 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HMGN4O00479 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGN4O00479 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGN4O00479 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HMGN4O00479 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGN4O00479 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGN4O00479 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGN4O00479 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGN4O00479 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGN4O00479 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGN4O00479 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC18.15■□□□□ 0.5
HMGN4O00479 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC18.15■□□□□ 0.5
HMGN4O00479 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HMGN4O00479 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
HMGN4O00479 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC18.15■□□□□ 0.5
HMGN4O00479 AC092666.2-201ENST00000613287 246 ntBASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms