Protein–RNA interactions for Protein: A6NKD9

CCDC85C, Coiled-coil domain-containing protein 85C, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC85CA6NKD9 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC21.8■■□□□ 1.08
CCDC85CA6NKD9 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC85CA6NKD9 AL035633.1-201ENST00000406139 838 ntBASIC21.8■■□□□ 1.08
CCDC85CA6NKD9 TSPY22P-201ENST00000427496 604 ntBASIC21.8■■□□□ 1.08
CCDC85CA6NKD9 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC21.8■■□□□ 1.08
CCDC85CA6NKD9 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC85CA6NKD9 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC85CA6NKD9 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC21.8■■□□□ 1.08
CCDC85CA6NKD9 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC85CA6NKD9 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC85CA6NKD9 KRT8P36-201ENST00000489121 1440 ntBASIC21.8■■□□□ 1.08
CCDC85CA6NKD9 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC85CA6NKD9 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC85CA6NKD9 AL162741.1-201ENST00000565563 1558 ntBASIC21.79■■□□□ 1.08
CCDC85CA6NKD9 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC85CA6NKD9 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC85CA6NKD9 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC85CA6NKD9 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC85CA6NKD9 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC85CA6NKD9 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC21.79■■□□□ 1.08
CCDC85CA6NKD9 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC85CA6NKD9 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC85CA6NKD9 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC21.79■■□□□ 1.08
CCDC85CA6NKD9 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC21.79■■□□□ 1.08
CCDC85CA6NKD9 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC85CA6NKD9 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC85CA6NKD9 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
CCDC85CA6NKD9 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC85CA6NKD9 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC85CA6NKD9 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC85CA6NKD9 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC21.78■■□□□ 1.08
CCDC85CA6NKD9 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
CCDC85CA6NKD9 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC85CA6NKD9 FAM8A3P-201ENST00000427218 844 ntBASIC21.78■■□□□ 1.08
CCDC85CA6NKD9 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC21.78■■□□□ 1.08
CCDC85CA6NKD9 AF238378.1-201ENST00000526806 358 ntBASIC21.78■■□□□ 1.08
CCDC85CA6NKD9 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC85CA6NKD9 RPL18-209ENST00000550645 463 ntTSL 5 BASIC21.78■■□□□ 1.08
CCDC85CA6NKD9 RPL18-214ENST00000552588 559 ntTSL 3 BASIC21.78■■□□□ 1.08
CCDC85CA6NKD9 AC074051.2-201ENST00000565115 352 ntBASIC21.78■■□□□ 1.08
CCDC85CA6NKD9 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC21.78■■□□□ 1.08
CCDC85CA6NKD9 AC112497.1-201ENST00000624824 639 ntBASIC21.78■■□□□ 1.08
CCDC85CA6NKD9 AC093323.1-202ENST00000635031 2045 ntBASIC21.78■■□□□ 1.08
CCDC85CA6NKD9 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC21.78■■□□□ 1.08
CCDC85CA6NKD9 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC85CA6NKD9 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC85CA6NKD9 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC21.78■■□□□ 1.08
CCDC85CA6NKD9 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC85CA6NKD9 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC21.77■■□□□ 1.08
CCDC85CA6NKD9 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC21.77■■□□□ 1.08
CCDC85CA6NKD9 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC85CA6NKD9 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC85CA6NKD9 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC85CA6NKD9 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC85CA6NKD9 Z85996.1-201ENST00000494644 937 ntBASIC21.77■■□□□ 1.08
CCDC85CA6NKD9 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC21.77■■□□□ 1.08
CCDC85CA6NKD9 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC85CA6NKD9 CAND2-206ENST00000626378 333 ntTSL 5 BASIC21.77■■□□□ 1.08
CCDC85CA6NKD9 AC093525.10-201ENST00000625130 1569 ntBASIC21.77■■□□□ 1.08
CCDC85CA6NKD9 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC21.76■■□□□ 1.07
CCDC85CA6NKD9 AC243591.1-201ENST00000452967 1364 ntBASIC21.76■■□□□ 1.07
CCDC85CA6NKD9 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC85CA6NKD9 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
CCDC85CA6NKD9 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC21.76■■□□□ 1.07
CCDC85CA6NKD9 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC85CA6NKD9 RPSAP43-201ENST00000402237 625 ntBASIC21.76■■□□□ 1.07
CCDC85CA6NKD9 LBH-203ENST00000404397 543 ntTSL 4 BASIC21.76■■□□□ 1.07
CCDC85CA6NKD9 LBH-204ENST00000406087 559 ntTSL 4 BASIC21.76■■□□□ 1.07
CCDC85CA6NKD9 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC85CA6NKD9 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC85CA6NKD9 DHDH-204ENST00000523250 634 ntTSL 5 BASIC21.76■■□□□ 1.07
CCDC85CA6NKD9 ABR-204ENST00000543210 1049 ntTSL 2 BASIC21.76■■□□□ 1.07
CCDC85CA6NKD9 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC21.76■■□□□ 1.07
CCDC85CA6NKD9 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC21.76■■□□□ 1.07
CCDC85CA6NKD9 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC21.76■■□□□ 1.07
CCDC85CA6NKD9 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC21.76■■□□□ 1.07
CCDC85CA6NKD9 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC21.76■■□□□ 1.07
CCDC85CA6NKD9 AC099336.1-202ENST00000602961 463 ntBASIC21.76■■□□□ 1.07
CCDC85CA6NKD9 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
CCDC85CA6NKD9 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC85CA6NKD9 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC85CA6NKD9 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC21.76■■□□□ 1.07
CCDC85CA6NKD9 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC85CA6NKD9 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC85CA6NKD9 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC21.75■■□□□ 1.07
CCDC85CA6NKD9 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC21.75■■□□□ 1.07
CCDC85CA6NKD9 MED22-202ENST00000371999 987 ntTSL 3 BASIC21.75■■□□□ 1.07
CCDC85CA6NKD9 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC85CA6NKD9 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
CCDC85CA6NKD9 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC21.75■■□□□ 1.07
CCDC85CA6NKD9 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC85CA6NKD9 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC85CA6NKD9 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC21.75■■□□□ 1.07
CCDC85CA6NKD9 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
CCDC85CA6NKD9 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC85CA6NKD9 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC85CA6NKD9 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
CCDC85CA6NKD9 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC85CA6NKD9 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC85CA6NKD9 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC21.74■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms