Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AL590490.1-201ENST00000455599 316 ntTSL 5 BASIC7.95□□□□□ -1.14
COL9A1P20849 CXCR6-203ENST00000457814 1184 ntAPPRIS P1 TSL 1 (best) BASIC7.95□□□□□ -1.14
COL9A1P20849 RPL21P99-201ENST00000480369 423 ntBASIC7.95□□□□□ -1.14
COL9A1P20849 PRICKLE2-AS2-201ENST00000484703 496 ntTSL 3 BASIC7.95□□□□□ -1.14
COL9A1P20849 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC7.95□□□□□ -1.14
COL9A1P20849 AC091965.3-201ENST00000506236 208 ntBASIC7.95□□□□□ -1.14
COL9A1P20849 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC7.95□□□□□ -1.14
COL9A1P20849 RNA5SP92-201ENST00000516437 110 ntBASIC7.95□□□□□ -1.14
COL9A1P20849 IGHV3-63-201ENST00000518422 341 ntBASIC7.95□□□□□ -1.14
COL9A1P20849 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC7.95□□□□□ -1.14
COL9A1P20849 MYL2-203ENST00000548438 664 ntTSL 3 BASIC7.95□□□□□ -1.14
COL9A1P20849 COPZ1-205ENST00000548753 778 ntTSL 3 BASIC7.95□□□□□ -1.14
COL9A1P20849 RPL3P13-201ENST00000550415 216 ntBASIC7.95□□□□□ -1.14
COL9A1P20849 AC092332.1-201ENST00000563684 829 ntBASIC7.95□□□□□ -1.14
COL9A1P20849 AC010287.1-201ENST00000566916 357 ntBASIC7.95□□□□□ -1.14
COL9A1P20849 AC061975.3-201ENST00000583209 244 ntBASIC7.95□□□□□ -1.14
COL9A1P20849 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC7.95□□□□□ -1.14
COL9A1P20849 ZNF208-204ENST00000599916 740 ntTSL 1 (best) BASIC7.95□□□□□ -1.14
COL9A1P20849 AL022099.1-201ENST00000604551 712 ntBASIC7.95□□□□□ -1.14
COL9A1P20849 5S_rRNA.20-201ENST00000612104 118 ntBASIC7.95□□□□□ -1.14
COL9A1P20849 AL121612.2-201ENST00000612261 482 ntBASIC7.95□□□□□ -1.14
COL9A1P20849 RNVU1-19-201ENST00000613023 167 ntBASIC7.95□□□□□ -1.14
COL9A1P20849 RN7SL261P-201ENST00000613441 282 ntBASIC7.95□□□□□ -1.14
COL9A1P20849 AC023509.5-201ENST00000617434 807 ntBASIC7.95□□□□□ -1.14
COL9A1P20849 AC078909.2-201ENST00000620584 398 ntBASIC7.95□□□□□ -1.14
COL9A1P20849 AL122023.1-201ENST00000622847 530 ntBASIC7.95□□□□□ -1.14
COL9A1P20849 AC026336.5-201ENST00000624455 738 ntBASIC7.95□□□□□ -1.14
COL9A1P20849 MAPK10-345ENST00000641724 2980 ntAPPRIS P2 BASIC7.95□□□□□ -1.14
COL9A1P20849 PBLD-203ENST00000336578 2449 ntTSL 1 (best) BASIC7.95□□□□□ -1.14
COL9A1P20849 NAIP-204ENST00000503719 5347 ntTSL 5 BASIC7.95□□□□□ -1.14
COL9A1P20849 ITGB1-201ENST00000302278 3640 ntAPPRIS P2 TSL 1 (best) BASIC7.95□□□□□ -1.14
COL9A1P20849 SCN11A-201ENST00000302328 6500 ntAPPRIS P2 TSL 5 BASIC7.95□□□□□ -1.14
COL9A1P20849 AFF1-211ENST00000544085 3644 ntAPPRIS ALT2 TSL 5 BASIC7.95□□□□□ -1.14
COL9A1P20849 HMGCLL1-201ENST00000274901 2475 ntAPPRIS P1 TSL 1 (best) BASIC7.95□□□□□ -1.14
COL9A1P20849 BTK-202ENST00000372880 2248 ntTSL 2 BASIC7.95□□□□□ -1.14
COL9A1P20849 CCDC150P1-201ENST00000537123 2215 ntBASIC7.95□□□□□ -1.14
COL9A1P20849 AKAP4-202ENST00000376064 2864 ntAPPRIS P1 TSL 1 (best) BASIC7.95□□□□□ -1.14
COL9A1P20849 CDY11P-201ENST00000447168 1651 ntBASIC7.95□□□□□ -1.14
COL9A1P20849 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC7.95□□□□□ -1.14
COL9A1P20849 MCF2L2-203ENST00000447025 2394 ntTSL 1 (best) BASIC7.95□□□□□ -1.14
COL9A1P20849 LINC01721-201ENST00000457274 2376 ntTSL 2 BASIC7.95□□□□□ -1.14
COL9A1P20849 DDX42-203ENST00000457800 3323 ntTSL 5 BASIC7.95□□□□□ -1.14
COL9A1P20849 MYH2-206ENST00000622564 2379 ntTSL 1 (best) BASIC7.95□□□□□ -1.14
COL9A1P20849 GRID2-204ENST00000510992 2739 ntTSL 1 (best) BASIC7.94□□□□□ -1.14
COL9A1P20849 ZNF844-201ENST00000439326 6620 ntAPPRIS P1 TSL 1 (best) BASIC7.94□□□□□ -1.14
COL9A1P20849 SPIRE1-206ENST00000453447 2107 ntTSL 5 BASIC7.94□□□□□ -1.14
COL9A1P20849 AC110926.1-201ENST00000412499 2825 ntBASIC7.94□□□□□ -1.14
COL9A1P20849 FSHR-201ENST00000304421 2176 ntAPPRIS ALT2 TSL 1 (best) BASIC7.94□□□□□ -1.14
COL9A1P20849 IL31RA-203ENST00000359040 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC7.94□□□□□ -1.14
COL9A1P20849 SLFN12-202ENST00000394562 2539 ntAPPRIS P1 TSL 1 (best) BASIC7.94□□□□□ -1.14
COL9A1P20849 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC7.94□□□□□ -1.14
COL9A1P20849 PDIK1L-201ENST00000374269 2566 ntAPPRIS P1 TSL 1 (best) BASIC7.94□□□□□ -1.14
COL9A1P20849 AC011447.6-201ENST00000623510 2598 ntBASIC7.94□□□□□ -1.14
COL9A1P20849 CCDC39-201ENST00000442201 3279 ntAPPRIS P1 TSL 2 BASIC7.94□□□□□ -1.14
COL9A1P20849 CD180-201ENST00000256447 5388 ntAPPRIS P1 TSL 1 (best) BASIC7.94□□□□□ -1.14
COL9A1P20849 SERPINB2-201ENST00000299502 1913 ntAPPRIS P1 TSL 1 (best) BASIC7.94□□□□□ -1.14
COL9A1P20849 TMEM45A-201ENST00000323523 1567 ntAPPRIS P1 TSL 1 (best) BASIC7.94□□□□□ -1.14
COL9A1P20849 PRDM10-205ENST00000526082 3308 ntTSL 1 (best) BASIC7.94□□□□□ -1.14
COL9A1P20849 RAD21-201ENST00000297338 3749 ntAPPRIS P1 TSL 1 (best) BASIC7.94□□□□□ -1.14
COL9A1P20849 AC091013.1-201ENST00000499752 3734 ntTSL 2 BASIC7.94□□□□□ -1.14
COL9A1P20849 ITIH3-211ENST00000621946 3038 ntTSL 1 (best) BASIC7.94□□□□□ -1.14
COL9A1P20849 MATR3-201ENST00000394805 4843 ntAPPRIS P1 TSL 1 (best) BASIC7.94□□□□□ -1.14
COL9A1P20849 TMPRSS4-219ENST00000616579 3417 ntAPPRIS ALT2 TSL 5 BASIC7.94□□□□□ -1.14
COL9A1P20849 OR1Q1-201ENST00000297913 945 ntAPPRIS P1 BASIC7.94□□□□□ -1.14
COL9A1P20849 RNA5SP389-201ENST00000362610 115 ntBASIC7.94□□□□□ -1.14
COL9A1P20849 RNA5SP226-201ENST00000362653 115 ntBASIC7.94□□□□□ -1.14
COL9A1P20849 RNU6-666P-201ENST00000363499 107 ntBASIC7.94□□□□□ -1.14
COL9A1P20849 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC7.94□□□□□ -1.14
COL9A1P20849 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC7.94□□□□□ -1.14
COL9A1P20849 RN7SKP144-201ENST00000411108 279 ntBASIC7.94□□□□□ -1.14
COL9A1P20849 AC011752.1-203ENST00000417609 582 ntTSL 2 BASIC7.94□□□□□ -1.14
COL9A1P20849 AC006509.1-201ENST00000420788 634 ntBASIC7.94□□□□□ -1.14
COL9A1P20849 AC115283.1-201ENST00000427353 400 ntBASIC7.94□□□□□ -1.14
COL9A1P20849 RPL23AP30-201ENST00000432419 501 ntBASIC7.94□□□□□ -1.14
COL9A1P20849 GAPDHP32-201ENST00000433816 998 ntBASIC7.94□□□□□ -1.14
COL9A1P20849 AC119618.1-201ENST00000434191 222 ntBASIC7.94□□□□□ -1.14
COL9A1P20849 ANXA2P2-201ENST00000435128 1020 ntBASIC7.94□□□□□ -1.14
COL9A1P20849 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC7.94□□□□□ -1.14
COL9A1P20849 AC106869.1-202ENST00000441997 604 ntTSL 4 BASIC7.94□□□□□ -1.14
COL9A1P20849 GTF2F2P2-201ENST00000445825 721 ntBASIC7.94□□□□□ -1.14
COL9A1P20849 EIF4EBP2P1-201ENST00000450009 343 ntBASIC7.94□□□□□ -1.14
COL9A1P20849 TVP23CP1-201ENST00000450317 639 ntBASIC7.94□□□□□ -1.14
COL9A1P20849 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC7.94□□□□□ -1.14
COL9A1P20849 CMAHP-203ENST00000458373 1101 ntTSL 5 BASIC7.94□□□□□ -1.14
COL9A1P20849 MIR2053-201ENST00000459295 91 ntBASIC7.94□□□□□ -1.14
COL9A1P20849 AC114324.2-202ENST00000503812 134 ntBASIC7.94□□□□□ -1.14
COL9A1P20849 LINC02121-201ENST00000507950 432 ntTSL 2 BASIC7.94□□□□□ -1.14
COL9A1P20849 AC068134.3-201ENST00000513620 788 ntBASIC7.94□□□□□ -1.14
COL9A1P20849 RNU4ATAC8P-201ENST00000516196 109 ntBASIC7.94□□□□□ -1.14
COL9A1P20849 RNU6-410P-201ENST00000517006 107 ntBASIC7.94□□□□□ -1.14
COL9A1P20849 IGHV7-40-201ENST00000520963 296 ntBASIC7.94□□□□□ -1.14
COL9A1P20849 AC022616.3-201ENST00000523940 148 ntBASIC7.94□□□□□ -1.14
COL9A1P20849 AC109635.4-202ENST00000531666 412 ntBASIC7.94□□□□□ -1.14
COL9A1P20849 MIR4800-201ENST00000537353 80 ntBASIC7.94□□□□□ -1.14
COL9A1P20849 OR52E8-201ENST00000537935 1061 ntAPPRIS P1 BASIC7.94□□□□□ -1.14
COL9A1P20849 AC068631.3-201ENST00000538831 225 ntBASIC7.94□□□□□ -1.14
COL9A1P20849 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC7.94□□□□□ -1.14
COL9A1P20849 AL670379.11-201ENST00000604059 253 ntBASIC7.94□□□□□ -1.14
COL9A1P20849 AL670379.10-201ENST00000604330 253 ntBASIC7.94□□□□□ -1.14
COL9A1P20849 AL670379.12-201ENST00000605291 253 ntBASIC7.94□□□□□ -1.14
Retrieved 100 of 98,524 protein–RNA pairs in 145.7 ms