Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 AC244107.2-201ENST00000611773 76 ntBASIC2.18□□□□□ -2.06
USH2AO75445 ACTR3BP2-202ENST00000623630 1338 ntBASIC2.18□□□□□ -2.06
USH2AO75445 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
USH2AO75445 IL13RA2-201ENST00000243213 1371 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
USH2AO75445 LINC00690-201ENST00000429949 1365 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
USH2AO75445 NBPF11-202ENST00000614015 4630 ntAPPRIS P2 TSL 2 BASIC2.18□□□□□ -2.06
USH2AO75445 NBPF12-205ENST00000617614 4630 ntTSL 5 BASIC2.18□□□□□ -2.06
USH2AO75445 HTR2C-202ENST00000371950 4652 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
USH2AO75445 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
USH2AO75445 SVEP1-203ENST00000401783 12350 ntAPPRIS ALT2 TSL 5 BASIC2.18□□□□□ -2.06
USH2AO75445 BX322650.1-201ENST00000332359 2143 ntBASIC2.18□□□□□ -2.06
USH2AO75445 CELF2-202ENST00000399850 7085 ntAPPRIS P3 TSL 5 BASIC2.18□□□□□ -2.06
USH2AO75445 KIAA0040-206ENST00000619513 4340 ntTSL 2 BASIC2.18□□□□□ -2.06
USH2AO75445 SPEF2-211ENST00000509059 4707 ntAPPRIS ALT2 TSL 1 (best) BASIC2.18□□□□□ -2.06
USH2AO75445 PUM1-205ENST00000424085 4631 ntTSL 5 BASIC2.18□□□□□ -2.06
USH2AO75445 AC063976.2-201ENST00000425667 3556 ntBASIC2.18□□□□□ -2.06
USH2AO75445 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC2.18□□□□□ -2.06
USH2AO75445 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC2.18□□□□□ -2.06
USH2AO75445 GABRA1-218ENST00000637827 1838 ntAPPRIS P1 TSL 5 BASIC2.18□□□□□ -2.06
USH2AO75445 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
USH2AO75445 MIR640-201ENST00000385086 96 ntBASIC2.18□□□□□ -2.06
USH2AO75445 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC2.18□□□□□ -2.06
USH2AO75445 G6PC2-203ENST00000421979 494 ntTSL 3 BASIC2.18□□□□□ -2.06
USH2AO75445 AL356387.2-201ENST00000422272 243 ntBASIC2.18□□□□□ -2.06
USH2AO75445 AC092754.1-201ENST00000472975 479 ntBASIC2.18□□□□□ -2.06
USH2AO75445 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC2.18□□□□□ -2.06
USH2AO75445 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC2.18□□□□□ -2.06
USH2AO75445 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC2.18□□□□□ -2.06
USH2AO75445 PCAT19-201ENST00000588495 3472 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
USH2AO75445 RUNX1T1-205ENST00000436581 7454 ntTSL 5 BASIC2.18□□□□□ -2.06
USH2AO75445 ANKRD44-201ENST00000282272 5147 ntAPPRIS P1 TSL 5 BASIC2.18□□□□□ -2.06
USH2AO75445 SHANK2-211ENST00000449833 8850 ntTSL 5 BASIC2.18□□□□□ -2.06
USH2AO75445 GAPVD1-203ENST00000312123 4320 ntAPPRIS ALT1 TSL 1 (best) BASIC2.18□□□□□ -2.06
USH2AO75445 AL079307.1-201ENST00000553312 5982 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
USH2AO75445 PDZD2-202ENST00000438447 11704 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
USH2AO75445 PLEKHG4B-201ENST00000283426 11515 ntAPPRIS P2 TSL 1 (best) BASIC2.18□□□□□ -2.06
USH2AO75445 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
USH2AO75445 CACNA1D-203ENST00000422281 6414 ntAPPRIS ALT2 TSL 1 (best) BASIC2.18□□□□□ -2.06
USH2AO75445 CACNA1D-211ENST00000636570 6441 ntAPPRIS ALT2 TSL 5 BASIC2.18□□□□□ -2.06
USH2AO75445 ADGRB3-203ENST00000546190 4569 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
USH2AO75445 KLF7-201ENST00000309446 8362 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
USH2AO75445 CACNB4-245ENST00000637284 2423 ntTSL 5 BASIC2.17□□□□□ -2.06
USH2AO75445 NAA25-201ENST00000261745 6010 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
USH2AO75445 OR7E25P-202ENST00000641088 5937 ntBASIC2.17□□□□□ -2.06
USH2AO75445 LIMCH1-202ENST00000381753 5705 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
USH2AO75445 DDX1-208ENST00000621973 2183 ntTSL 5 BASIC2.17□□□□□ -2.06
USH2AO75445 PLCZ1-201ENST00000266505 2148 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
USH2AO75445 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC2.17□□□□□ -2.06
USH2AO75445 RNA5SP119-201ENST00000362715 117 ntBASIC2.17□□□□□ -2.06
USH2AO75445 GNG5P2-201ENST00000372054 207 ntBASIC2.17□□□□□ -2.06
USH2AO75445 LINC00626-201ENST00000420691 955 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
USH2AO75445 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC2.17□□□□□ -2.06
USH2AO75445 UQCRHP4-201ENST00000471686 272 ntBASIC2.17□□□□□ -2.06
USH2AO75445 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC2.17□□□□□ -2.06
USH2AO75445 EIF4E-204ENST00000504432 1132 ntTSL 5 BASIC2.17□□□□□ -2.06
USH2AO75445 AC010460.1-201ENST00000507087 466 ntBASIC2.17□□□□□ -2.06
USH2AO75445 AP000619.3-201ENST00000535634 1127 ntBASIC2.17□□□□□ -2.06
USH2AO75445 LINC02345-203ENST00000558897 405 ntTSL 3 BASIC2.17□□□□□ -2.06
USH2AO75445 AL359757.2-201ENST00000624309 274 ntBASIC2.17□□□□□ -2.06
USH2AO75445 AP001002.2-201ENST00000625137 386 ntBASIC2.17□□□□□ -2.06
USH2AO75445 MYLK4-201ENST00000274643 5806 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
USH2AO75445 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
USH2AO75445 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC2.17□□□□□ -2.06
USH2AO75445 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC2.17□□□□□ -2.06
USH2AO75445 ZCCHC6-206ENST00000375963 5379 ntAPPRIS P1 TSL 5 BASIC2.17□□□□□ -2.06
USH2AO75445 SPTAN1-203ENST00000372739 7868 ntAPPRIS ALT1 TSL 1 (best) BASIC2.17□□□□□ -2.06
USH2AO75445 FBXO40-201ENST00000338040 5929 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
USH2AO75445 RUBCNL-205ENST00000389908 3956 ntAPPRIS P3 TSL 2 BASIC2.17□□□□□ -2.06
USH2AO75445 OR2T6-202ENST00000641644 4670 ntAPPRIS P1 BASIC2.17□□□□□ -2.06
USH2AO75445 SCP2-206ENST00000430330 938 ntTSL 2 BASIC2.17□□□□□ -2.06
USH2AO75445 AL357507.1-201ENST00000435946 669 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
USH2AO75445 AL672167.1-201ENST00000441381 464 ntTSL 3 BASIC2.17□□□□□ -2.06
USH2AO75445 AL162591.2-201ENST00000449634 317 ntBASIC2.17□□□□□ -2.06
USH2AO75445 MEMO1P4-201ENST00000453590 386 ntBASIC2.17□□□□□ -2.06
USH2AO75445 AC073130.1-202ENST00000454897 587 ntTSL 2 BASIC2.17□□□□□ -2.06
USH2AO75445 CAB39P1-201ENST00000502277 460 ntBASIC2.17□□□□□ -2.06
USH2AO75445 AC090541.1-201ENST00000519803 467 ntTSL 3 BASIC2.17□□□□□ -2.06
USH2AO75445 UBA2-208ENST00000592791 910 ntTSL 2 BASIC2.17□□□□□ -2.06
USH2AO75445 AL137843.1-201ENST00000605078 385 ntBASIC2.17□□□□□ -2.06
USH2AO75445 LINC01709-202ENST00000635702 1204 ntTSL 5 BASIC2.17□□□□□ -2.06
USH2AO75445 VNN3-207ENST00000425515 1761 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
USH2AO75445 ASCC1-203ENST00000342444 2270 ntTSL 2 BASIC2.17□□□□□ -2.06
USH2AO75445 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC2.17□□□□□ -2.06
USH2AO75445 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC2.17□□□□□ -2.06
USH2AO75445 SLC7A2-201ENST00000004531 7560 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
USH2AO75445 POC1B-AS1-201ENST00000605233 8041 ntTSL 2 BASIC2.17□□□□□ -2.06
USH2AO75445 PDE6A-205ENST00000617647 4039 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
USH2AO75445 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
USH2AO75445 TNRC6C-202ENST00000335749 9740 ntAPPRIS P4 TSL 5 BASIC2.17□□□□□ -2.06
USH2AO75445 DLEU7-AS1-201ENST00000413510 1806 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
USH2AO75445 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
USH2AO75445 BCOR-205ENST00000397354 6258 ntAPPRIS P3 TSL 1 (best) BASIC2.17□□□□□ -2.06
USH2AO75445 SIK2-201ENST00000304987 9678 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
USH2AO75445 HOMER1-201ENST00000282260 774 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
USH2AO75445 LINC01133-202ENST00000443364 1266 ntTSL 5 BASIC2.17□□□□□ -2.06
USH2AO75445 AC007688.1-201ENST00000475592 759 ntBASIC2.17□□□□□ -2.06
USH2AO75445 LINC01493-202ENST00000533575 581 ntTSL 4 BASIC2.17□□□□□ -2.06
USH2AO75445 DUX4L52-201ENST00000549363 777 ntBASIC2.17□□□□□ -2.06
USH2AO75445 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC2.17□□□□□ -2.06
USH2AO75445 AC026992.2-201ENST00000570122 766 ntTSL 5 BASIC2.17□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 78.2 ms